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Publications of Author

1. J. Feng, Laxmi Parida, Ruhong Zhou
   Protein folding trajectory analysis using patterned clusters. [Citation Graph (0, 0)][DBLP]
   APBC, 2005, pp:95-104 [Conf]
   
2. Blake G. Fitch, Aleksandr Rayshubskiy, Maria Eleftheriou, T. J. Christopher Ward, Mark Giampapa, Yuriy Zhestkov, Michael Pitman, Frank Suits, Alan Grossfield, Jed Pitera, William C. Swope, Ruhong Zhou, Scott Feller, Robert S. Germain
   Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L. [Citation Graph (0, 0)][DBLP]
   International Conference on Computational Science (2), 2006, pp:846-854 [Conf]
   
3. Maria Eleftheriou, Aleksandr Rayshubskiy, J. W. Pitera, Blake G. Fitch, Ruhong Zhou, Robert S. Germain
   Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L. [Citation Graph (0, 0)][DBLP]
   IPDPS, 2006, pp:- [Conf]
   
4. Ruhong Zhou, B. David Silverman
   Detecting Native Protein Folds Among Large Decoy Sets with Hydrophobic Moment Profiling. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2002, pp:673-684 [Conf]
   
5. Ruhong Zhou, Laxmi Parida, Kush Kapila, Sudhir P. Mudur
   PROTERAN: animated terrain evolution for visual analysis of patterns in protein folding trajectory. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2007, v:23, n:1, pp:99-106 [Journal]
   
6. Frances E. Allen, George S. Almasi, Wanda Andreoni, Daniel K. Beece, Bruce J. Berne, Arthur A. Bright, José R. Brunheroto, Calin Cascaval, José G. Castaños, Paul Coteus, Paul Crumley, Alessandro Curioni, Monty Denneau, Wilm E. Donath, Maria Eleftheriou, Blake G. Fitch, Bruce M. Fleischer, Christos J. Georgiou, Robert S. Germain, Mark Giampapa, Donna L. Gresh, Manish Gupta, Ruud A. Haring, C. T. Howard Ho, Peter H. Hochschild, Susan Flynn Hummel, Tiziana Jonas, Derek Lieber, Glenn J. Martyna, Kiran K. Maturu, José E. Moreira, Dennis M. Newns, Matthew Newton, Robert Philhower, Thomas Picunko, Jed Pitera, Michael Pitman, Rick A. Rand, Ajay K. Royyuru, Valentina Salapura, Alda Sanomiya, Rahul S. Shah, Yuk Yin Sham, Sarabjeet Singh, Marc Snir, Frank Suits, Richard A. Swetz, William C. Swope, Nagesh K. Vishnumurthy, T. J. Christopher Ward, Henry S. Warren Jr., Ruhong Zhou
   Blue Gene: A vision for protein science using a petaflop supercomputer. [Citation Graph (0, 0)][DBLP]
   IBM Systems Journal, 2001, v:40, n:2, pp:310-327 [Journal]
   
7. Lei Ye, Huajun Chen, Ting Liu, Zhaohui Wu, Jingyuan Li, Ruhong Zhou
   A Wavelet Approach for the Analysis of Folding Trajectory of Protein Trp-cage. [Citation Graph (0, 0)][DBLP]
   J. Bioinformatics and Computational Biology, 2005, v:3, n:6, pp:1351-1370 [Journal]
   
8. George A. Kaminski, Richard A. Friesner, Ruhong Zhou
   A computationally inexpensive modification of the point dipole electrostatic polarization model for molecular simulations. [Citation Graph (0, 0)][DBLP]
   Journal of Computational Chemistry, 2003, v:24, n:3, pp:267-276 [Journal]
   
9. George A. Kaminski, Harry A. Stern, Bruce J. Berne, Richard A. Friesner, Yixiang X. Cao, Robert B. Murphy, Ruhong Zhou, Thomas A. Halgren
   Development of a polarizable force field for proteins via ab initio quantum chemistry: First generation model and gas phase tests. [Citation Graph (0, 0)][DBLP]
   Journal of Computational Chemistry, 2002, v:23, n:16, pp:1515-1531 [Journal]
   
10. Blake G. Fitch, Robert S. Germain, Mark P. Mendell, Jed Pitera, Michael Pitman, Aleksandr Rayshubskiy, Yuk Yin Sham, Frank Suits, William C. Swope, T. J. Christopher Ward, Yuriy Zhestkov, Ruhong Zhou
    Blue Matter, an application framework for molecular simulation on Blue Gene. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2003, v:63, n:7-8, pp:759-773 [Journal]
    
11. 
    Using a mutual information-based site transition network to map the genetic evolution of influenza A/H3N2 virus. [Citation Graph (, )][DBLP]