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Publications of Author

1. Jinbo Xu, Libo Yu, Ming Li
   Consensus fold recognition by predicted model quality. [Citation Graph (0, 0)][DBLP]
   APBC, 2005, pp:73-83 [Conf]
   
2. Jinbo Xu, Daniel G. Brown, Ming Li, Bin Ma
   Optimizing Multiple Spaced Seeds for Homology Search. [Citation Graph (0, 0)][DBLP]
   CPM, 2004, pp:47-58 [Conf]
   
3. Jinbo Xu, Feng Jiao, Bonnie Berger
   A Tree-Decomposition Approach to Protein Structure Prediction. [Citation Graph (0, 0)][DBLP]
   CSB, 2005, pp:247-256 [Conf]
   
4. Rohit Singh, Jinbo Xu, Bonnie Berger
   Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2006, pp:403-414 [Conf]
   
5. Thomas Tang, Jinbo Xu, Ming Li
   Discovering Sequence-Structure Motifs from Protein Segments and Two Applications. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2005, pp:- [Conf]
   
6. Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu
   Protein Threading by Linear Programming. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2003, pp:264-275 [Conf]
   
7. Jinbo Xu
   Rapid Protein Side-Chain Packing via Tree Decomposition. [Citation Graph (0, 0)][DBLP]
   RECOMB, 2005, pp:423-439 [Conf]
   
8. Jinbo Xu, Feng Jiao, Bonnie Berger
   A Parameterized Algorithm for Protein Structure Alignment. [Citation Graph (0, 0)][DBLP]
   RECOMB, 2006, pp:488-499 [Conf]
   
9. Rohit Singh, Jinbo Xu, Bonnie Berger
   Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology. [Citation Graph (0, 0)][DBLP]
   RECOMB, 2007, pp:16-31 [Conf]
   
10. Jinbo Xu
    Speedup LP Approach to Protein Threading via Graph Reduction. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:374-388 [Conf]
    
11. Jinbo Xu, Bonnie Berger
    Fast and accurate algorithms for protein side-chain packing. [Citation Graph (0, 0)][DBLP]
    J. ACM, 2006, v:53, n:4, pp:533-557 [Journal]
    
12. Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu
    Raptor: Optimal Protein Threading by Linear Programming. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2003, v:1, n:1, pp:95-118 [Journal]
    
13. Jinbo Xu, Ming Li, Ying Xu
    Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. [Citation Graph (0, 0)][DBLP]
    J. Comb. Optim., 2004, v:8, n:4, pp:403-418 [Journal]
    
14. Jinbo Xu
    Fold Recognition by Predicted Alignment Accuracy. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2005, v:2, n:2, pp:157-165 [Journal]
    
15. Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu
    Approximation algorithms for NMR spectral peak assignment. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2003, v:1, n:299, pp:211-229 [Journal]
    
16. Yong Dou, Jinbo Xu
    FPGA-Accelerated Active Shape Model for Real-Time People Tracking. [Citation Graph (0, 0)][DBLP]
    Asia-Pacific Computer Systems Architecture Conference, 2007, pp:268-279 [Conf]
    
17. Jianbo Qian, Shuai Cheng Li, Dongbo Bu, Ming Li, Jinbo Xu
    Finding Compact Structural Motifs. [Citation Graph (0, 0)][DBLP]
    CPM, 2007, pp:142-149 [Conf]
    
18. 
    Implementation of Rotation Invariant Multi-View Face Detection on FPGA. [Citation Graph (, )][DBLP]
    
    
19. 
    Finding Largest Well-Predicted Subset of Protein Structure Models. [Citation Graph (, )][DBLP]
    
    
20. 
    FPGA Accelerating Algorithms of Active Shape Model in People Tracking Applications. [Citation Graph (, )][DBLP]
    
    
21. 
    FPGA accelerating three QR decomposition algorithms in the unified pipelined framework. [Citation Graph (, )][DBLP]
    
    
22. 
    Double Precision Hybrid-Mode Floating-Point FPGA CORDIC Co-processor. [Citation Graph (, )][DBLP]
    
    
23. 
    Designing succinct structural alphabets. [Citation Graph (, )][DBLP]
    
    
24. 
    Global Alignment of Multiple Protein Interaction Networks. [Citation Graph (, )][DBLP]
    
    
25. 
    Rapid and Accurate Protein Side Chain Prediction with Local Backbone Information. [Citation Graph (, )][DBLP]
    
    
26. 
    Boosting Protein Threading Accuracy. [Citation Graph (, )][DBLP]
    
    
27. 
    A Probabilistic Graphical Model for Ab Initio Folding. [Citation Graph (, )][DBLP]
    
    
28. 
    Graph algorithms for biological systems analysis. [Citation Graph (, )][DBLP]
    
    
29. 
    Rectangularly Multi-Module Memory System with Table-Based Dynamic Addressing Scheme. [Citation Graph (, )][DBLP]
    
    
30. 
    Hardware BLAST Algorithms with Multi-seeds Detection and Parallel Extension. [Citation Graph (, )][DBLP]
    
    
31. 
    Low-homology protein threading. [Citation Graph (, )][DBLP]
    
    
32. 
    Fragment-free approach to protein folding using conditional neural fields. [Citation Graph (, )][DBLP]