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Ying Xu: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Minghui Jiang, Ying Xu, Binhai Zhu
    Protein Structure-Structure Alignment with Discrete Fr'echet Distance. [Citation Graph (0, 0)][DBLP]
    APBC, 2007, pp:131-141 [Conf]
  2. Yu Chen, Trupti Joshi, Ying Xu, Dong Xu
    Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data. [Citation Graph (0, 0)][DBLP]
    BIBE, 2003, pp:18-25 [Conf]
  3. Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
    A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. [Citation Graph (0, 0)][DBLP]
    BIBE, 2003, pp:3-10 [Conf]
  4. Zhengchang Su, PhuongAn Dam, Victor Olman, Ying Xu
    Computational Inference of Transcription Regulation and Response Networks in Synechococcus sp. WH8102. [Citation Graph (0, 0)][DBLP]
    BIBE, 2004, pp:5-8 [Conf]
  5. K. D. Anon, N. Boulerice, Eduard Cerny, Francisco Corella, Michel Langevin, Xiaoyu Song, Sofiène Tahar, Ying Xu, Zijian Zhou
    MDG Tools for the Verification of RTL Designs. [Citation Graph (0, 0)][DBLP]
    CAV, 1996, pp:433-436 [Conf]
  6. Ying Xu, Eduard Cerny, Xiaoyu Song, Francisco Corella, Otmane Aït Mohamed
    Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs. [Citation Graph (0, 0)][DBLP]
    CAV, 1998, pp:219-231 [Conf]
  7. Ying Xu, Eduard Cerny, Allan Silburt, A. Coady, Ying Liu, Philip Pownall
    Practical Application of Formal Verification Techniques on a Frame Mux/Demux Chip from Nortel Semiconductors. [Citation Graph (0, 0)][DBLP]
    CHARME, 1999, pp:110-124 [Conf]
  8. PhuongAn Dam, Victor Olman, Ying Xu
    Improving Operon Prediction in E. coli. [Citation Graph (0, 0)][DBLP]
    CSB Workshops, 2005, pp:69-70 [Conf]
  9. PhuongAn Dam, Zhengchang Su, Victor Olman, Ying Xu
    In Silico Construction of the Carbon Fixation Pathway in Synechococcus sp. WH8102. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:614-615 [Conf]
  10. Zhong Chen, Ying Xu
    Multi-Scale Hierarchical Structure Prediction of Helical Transmembrane Proteins. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:203-207 [Conf]
  11. Jun-tao Guo, Ying Xu
    Molecular Modeling of Full-Length OxyR from Shewanella oneidensis MR-1 and Molecular Dynamics Studies of the Activation Domain. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:708-709 [Conf]
  12. Guojun Li, Jizhu Lu, Victor Olman, Ying Xu
    PROMOCO: a New Program for Prediction of cis Regulatory Elements: From High-Information Content Analysis to Clique Identification. [Citation Graph (0, 0)][DBLP]
    CSB Workshops, 2005, pp:35-36 [Conf]
  13. Guo-Hui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu
    An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks. [Citation Graph (0, 0)][DBLP]
    CSB, 2002, pp:165-174 [Conf]
  14. Fenglou Mao, Zhengchang Su, Victor Olman, David Chuang, Ying Xu
    Pathway Mapping with Operon Information: An Integer-Programming Method. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:642-643 [Conf]
  15. Victor Olman, Jizhu Lu, PhuongAn Dam, Zhengchang Su, Ying Xu
    CUBIC: Search for Binding Sites. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:666-667 [Conf]
  16. Victor Olman, Hanchuan Peng, Zhengchang Su, Ying Xu
    Mapping of Microbial Pathways through Constrained Mapping of Orthologous Genes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:363-370 [Conf]
  17. Victor Olman, Dong Xu, Ying Xu
    CUBIC: Identification of Regulatory Binding Sites Through Data Clustering. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:448-449 [Conf]
  18. Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu
    A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:421-423 [Conf]
  19. Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, B. Palenik, Ying Xu
    Computational Inference of Regulatory Pathways in Microbes. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:631-633 [Conf]
  20. Zhengchang Su, PhuongAn Dam, X. Chen, Victor Olman, Tao Jiang, Ying Xu
    Computational Construction of Nitrogen Assimilation Pathway in Cyanobacteria Synechococcus sp. WH8102. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:640-641 [Conf]
  21. Peng Wang, Zhengchang Su, PhuongAn Dam, Ying Xu
    A Knowledge Base for Computational Pathway Reconstruction. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:612-613 [Conf]
  22. Peng Wang, Zhengchang Su, Jun-tao Guo, Ying Xu
    Structural Analysis of FGFR1 Kinase Activation through Molecular Dynamics Simulation. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:700-701 [Conf]
  23. Peng Wang, Bo Yan, Juntao Guo, Chindo Hicks, Ying Xu
    Structural genomics analysis of alternative splicing and its application in modeling structures of alternatively spliced variants. [Citation Graph (0, 0)][DBLP]
    CSB Workshops, 2005, pp:217-0 [Conf]
  24. Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu
    Separation of Ion Types in Tandem Mass Spectrometry Data Interpretation - A Graph-Theoretic Approach. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:236-244 [Conf]
  25. Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu
    Accurate Prediction of Orthologous Gene Groups in Microbes. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:73-79 [Conf]
  26. Zhi-Zhong Chen, Tao Jiang, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu
    More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. [Citation Graph (0, 0)][DBLP]
    ESA, 2003, pp:580-592 [Conf]
  27. Harold N. Gabow, Ying Xu
    Efficient Algorithms for Independent Assignments on Graphic and Linear Matroids [Citation Graph (0, 0)][DBLP]
    FOCS, 1989, pp:106-111 [Conf]
  28. Robin Kramer, Victor Olman, Ying Xu, Dong Xu
    DigitalTree: A Tool for Displaying Biological Data in Tree Structure. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science (2), 2006, pp:855-862 [Conf]
  29. Yougang Song, Ying Xu, Brett D. Fleisch
    Design and Performance Evaluation of a Proxy-based Java Rewriting Security System. [Citation Graph (0, 0)][DBLP]
    ICDCS, 2006, pp:11- [Conf]
  30. Shu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang
    Exploring the Performance Benefits of End-to-End Path Switching. [Citation Graph (0, 0)][DBLP]
    ICNP, 2004, pp:304-315 [Conf]
  31. Ying Xu, Roch Guérin
    Individual QoS versus Aggregate QoS: A Loss Performance Study. [Citation Graph (0, 0)][DBLP]
    INFOCOM, 2002, pp:- [Conf]
  32. Ying Xu, Harold N. Gabow
    Fast Algorithms for Transversal Matroid Intersection Problems [Citation Graph (0, 0)][DBLP]
    ISAAC, 1994, pp:625-633 [Conf]
  33. Ying Xu, Edward C. Uberbacher
    Gene Prediction by Pattern Recognition and Homology Search. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:241-251 [Conf]
  34. Chunmei Liu, Bo Yan, Yinglei Song, Ying Xu, Liming Cai
    Peptide sequence tag-based blind identification of post-translational modifications with point process model. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:307-313 [Conf]
  35. Ying Xu, Richard J. Mural, Edward C. Uberbacher
    Inferring Gene Structures in Genomic Sequences Using Pattern Recognition and Expressed Sequence Tags. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:344-353 [Conf]
  36. Junfeng Tian, Yue Fu, Ying Xu, Jian-ling Wang
    Intrusion Detection Combining Multiple Decision Trees by Fuzzy logic. [Citation Graph (0, 0)][DBLP]
    PDCAT, 2005, pp:256-258 [Conf]
  37. Victor Olman, Dong Xu, Ying Xu
    Identification of Regulatory Binding Sites Using Minimum Spanning Trees. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:327-338 [Conf]
  38. Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai
    Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2006, pp:255-266 [Conf]
  39. Youxing Qu, Jun-tao Guo, Victor Olman, Ying Xu
    Protein Fold Recognition Through Application of Residual Dipolar Coupling Data. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2004, pp:459-470 [Conf]
  40. Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu
    Protein Threading by Linear Programming. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:264-275 [Conf]
  41. Bo Yan, Tong Zhou, Peng Wang, Zhijie Liu, Vincent A. Emanuele II, Victor Olman, Ying Xu
    A Point-Process Model for Rapid Identification of Post-Translational Modifications. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2006, pp:327-338 [Conf]
  42. Ying Xu, Roch Guérin
    On Evaluating Loss Performance Deviation: A Simple Tool and Its Practical Implications. [Citation Graph (0, 0)][DBLP]
    QoS-IP, 2003, pp:1-18 [Conf]
  43. Ying Xu, Edward C. Uberbacher
    Reference-based gene model prediction on DNA contigs (extended abstract). [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:330-336 [Conf]
  44. Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu
    Protein structure determination using protein threading and sparse NMR data (extended abstract). [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:299-307 [Conf]
  45. Ying Xu, Dong Xu, Edward C. Uberbacher
    A new method for modeling and solving the protein fold recognition problem (extended abstract). [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:285-292 [Conf]
  46. Shu Tao, Kuai Xu, Ying Xu, Teng Fei, Lixin Gao, Roch Guérin, James F. Kurose, Donald F. Towsley, Zhi-Li Zhang
    Exploring the performance benefits of end-to-end path switching. [Citation Graph (0, 0)][DBLP]
    SIGMETRICS, 2004, pp:418-419 [Conf]
  47. Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu
    Improved Approximation Algorithms for NMR Spectral Peak Assignment. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:82-96 [Conf]
  48. Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
    Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    WABI, 2005, pp:376-388 [Conf]
  49. Ying Xu, Fu-yuan Xu
    Research on Context Modeling Based on Ontology. [Citation Graph (0, 0)][DBLP]
    CIMCA/IAWTIC, 2006, pp:188- [Conf]
  50. Ying Xu, Fu-yuan Xu
    Researching on The Method and Technology of Creating Temporal Categories for an Ontology of Time. [Citation Graph (0, 0)][DBLP]
    CIMCA/IAWTIC, 2006, pp:264- [Conf]
  51. Ying Xu, Fu-yuan Xu, Sheng-qi Li
    A System for Project Distribution Based on the Semantic Matching Method. [Citation Graph (0, 0)][DBLP]
    CIMCA/IAWTIC, 2006, pp:187- [Conf]
  52. Xinglai Ji, Ying Xu
    libSRES: a C library for stochastic ranking evolution strategy for parameter estimation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:1, pp:124-126 [Journal]
  53. Pei Hao, Wei-Zhong He, Yin Huang, Liang-Xiao Ma, Ying Xu, Hong Xi, Chuan Wang, Bo-Shu Liu, Jin-Miao Wang, Yi-Xue Li, Yang Zhong
    MPSS: an integrated database system for surveying a set of proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2142-2143 [Journal]
  54. Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
    A computational pipeline for protein structure prediction and analysis at genome scale. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:15, pp:1985-1996 [Journal]
  55. Ying Xu, Edward C. Uberbacher
    A polynomial-time algorithm for a class of protein threading problems. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:6, pp:511-517 [Journal]
  56. Dong Xu, Guangshan Li, Liyou Wu, Jizhong Zhou, Ying Xu
    PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:11, pp:1432-1437 [Journal]
  57. Ying Xu, Richard J. Mural, Edward C. Uberbacher
    Constructing gene models from accurately predicted exons: an application of dynamic programming. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1994, v:10, n:6, pp:613-623 [Journal]
  58. Ying Xu, Richard J. Mural, Edward C. Uberbacher
    Correcting sequencing errors in DNA coding regions using a dynamic programming approach. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:2, pp:117-124 [Journal]
  59. Ying Xu, Victor Olman, Dong Xu
    Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:4, pp:536-545 [Journal]
  60. Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher
    Sequence-structure specificity of a knowledge based energy function at the secondary structure level. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:3, pp:269-285 [Journal]
  61. Ying Xu, Dong Xu, Harold N. Gabow
    Protein domain decomposition using a graph-theoretic approach. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1091-1104 [Journal]
  62. Bo Yan, Chongle Pan, Victor Olman, Robert L. Hettich, Ying Xu
    A graph-theoretic approach for the separation of b and y ions in tandem mass spectra. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:5, pp:563-574 [Journal]
  63. Fengfeng Zhou, Yu Xue, Xuebiao Yao, Ying Xu
    CSS-Palm: palmitoylation site prediction with a clustering and scoring strategy (CSS). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:7, pp:894-896 [Journal]
  64. Sherri Matis, Ying Xu, Manesh J. Shah, Xiaojun Guan, J. Ralph Einstein, Richard J. Mural, Edward C. Uberbacher
    Detection of RNA Polymerase II Promoters and Polyadenylation Sites in Human DNA Sequence. [Citation Graph (0, 0)][DBLP]
    Computers & Chemistry, 1996, v:20, n:1, pp:135-140 [Journal]
  65. Ying Xu, Roch Guérin
    On the robustness of router-based denial-of-service (DoS) defense systems. [Citation Graph (0, 0)][DBLP]
    Computer Communication Review, 2005, v:35, n:3, pp:47-60 [Journal]
  66. Ying Xu, Xiaoyu Song, Eduard Cerny, Otmane Aït Mohamed
    Model Checking for a First-Order Temporal Logic Using Multiway Decision Graphs (MDGs). [Citation Graph (0, 0)][DBLP]
    Comput. J., 2004, v:47, n:1, pp:71-84 [Journal]
  67. Guojun Li, Ying Xu, Chuanping Chen, Zhenhong Liu
    On Connected [g, f +1]-Factors in Graphs. [Citation Graph (0, 0)][DBLP]
    Combinatorica, 2005, v:25, n:4, pp:393-405 [Journal]
  68. Jean-Yves Potvin, Ying Xu, Ilham Benyahia
    Vehicle routing and scheduling with dynamic travel times. [Citation Graph (0, 0)][DBLP]
    Computers & OR, 2006, v:33, n:, pp:1129-1137 [Journal]
  69. Ying Xu, Edward C. Uberbacher
    2D image segmentation using minimum spanning trees. [Citation Graph (0, 0)][DBLP]
    Image Vision Comput., 1997, v:15, n:1, pp:47-57 [Journal]
  70. ZhenQiu Liu, Dechang Chen, Halima Bensmail, Ying Xu
    Clustering Gene Expression Data with Kernel Principal Components. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2005, v:3, n:2, pp:303-316 [Journal]
  71. Victor Olman, Dong Xu, Ying Xu
    Cubic: Identification of Regulatory Binding Sites through Data Clustering. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2003, v:1, n:1, pp:21-40 [Journal]
  72. Tema Fridman, Jane Razumovskaya, Nathan Verberkmoes, Gregory B. Hurst, Vladimir Protopopescu, Ying Xu
    The Probability Distribution for a Random Match between an Experimental-theoretical Spectral Pair in Tandem Mass Spectrometry. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2005, v:3, n:2, pp:455-476 [Journal]
  73. Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu
    Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2003, v:1, n:2, pp:387-410 [Journal]
  74. Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu
    Raptor: Optimal Protein Threading by Linear Programming. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2003, v:1, n:1, pp:95-118 [Journal]
  75. Zhong Chen, Ying Xu
    Structure Prediction of Helical Transmembrane Proteins at Two Length Scales. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:2, pp:317-334 [Journal]
  76. Victor Olman, Chindo Hicks, Peng Wang, Ying Xu
    Gene Expression Data Analysis in Subtypes of Ovarian Cancer Using Covariance Analysis. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:5, pp:999-1014 [Journal]
  77. Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu, Tao Jiang
    More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:2, pp:129-146 [Journal]
  78. Ying Xu, Edward C. Uberbacher
    Automated Gene Identification in Large-Scale Genomic Sequences. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:325-338 [Journal]
  79. Ying Xu, Richard J. Mural, Edward C. Uberbacher
    An Iterative Algorithm for Correcting Sequencing Errors in DNA Coding Regions. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1996, v:3, n:3, pp:333-344 [Journal]
  80. Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein
    A Computational Method for NMR-Constrained Protein Threading. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:3-4, pp:449-467 [Journal]
  81. Ying Xu, Dong Xu, Edward C. Uberbacher
    An Efficient Computational Method for Globally Optimal Threading. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:3, pp:597-0 [Journal]
  82. Jinbo Xu, Ming Li, Ying Xu
    Protein Threading by Linear Programming: Theoretical Analysis and Computational Results. [Citation Graph (0, 0)][DBLP]
    J. Comb. Optim., 2004, v:8, n:4, pp:403-418 [Journal]
  83. Ying Xu, Satoru Miyano, Tom Head
    Foreword. [Citation Graph (0, 0)][DBLP]
    J. Comb. Optim., 1999, v:3, n:2-3, pp:147-148 [Journal]
  84. Harold N. Gabow, Ying Xu
    Efficient Theoretic and Practical Algorithms for Linear Matroid Intersection Problems. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 1996, v:53, n:1, pp:129-147 [Journal]
  85. Ying Xu, Liming Cai, Zhiping Weng
    Preface. [Citation Graph (0, 0)][DBLP]
    J. Comput. Sci. Technol., 2005, v:20, n:4, pp:433-433 [Journal]
  86. Bo Yan, Youxing Qu, Fenglou Mao, Victor Olman, Ying Xu
    PRIME: A Mass Spectrum Data Mining Tool for De Nova Sequencing and PTMs Identification. [Citation Graph (0, 0)][DBLP]
    J. Comput. Sci. Technol., 2005, v:20, n:4, pp:483-490 [Journal]
  87. Jun-tao Guo, Kyle Ellrott, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu
    PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:522-525 [Journal]
  88. Yu Xue, Fengfeng Zhou, Chuanhai Fu, Ying Xu, Xuebiao Yao
    SUMOsp: a web server for sumoylation site prediction. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:254-257 [Journal]
  89. Ying Xu, Victor Olman, Edward C. Uberbacher
    A segmentation algorithm for noisy images: Design and evaluation. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition Letters, 1998, v:19, n:13, pp:1213-1224 [Journal]
  90. Yinglei Song, Chunmei Liu, Xiuzhen Huang, Russell L. Malmberg, Ying Xu, Liming Cai
    Efficient Parameterized Algorithms for Biopolymer Structure-Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:4, pp:423-432 [Journal]
  91. Zhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu
    Approximation algorithms for NMR spectral peak assignment. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2003, v:1, n:299, pp:211-229 [Journal]
  92. Ying Xu, Roch Guérin
    Individual QoS versus aggregate QoS: a loss performance study. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Netw., 2005, v:13, n:2, pp:370-383 [Journal]
  93. Huandong Sun, Ming Li, Ying Xu
    MOLVIE: an interactive visualization environment for molecular structures. [Citation Graph (0, 0)][DBLP]
    Computer Methods and Programs in Biomedicine, 2003, v:71, n:1, pp:85-90 [Journal]
  94. Hongwei Wu, Fenglou Mao, Victor Olman, Ying Xu
    An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes. [Citation Graph (0, 0)][DBLP]
    ISBRA, 2007, pp:551-563 [Conf]
  95. Guojun Li, Zhijie Liu, Jun-tao Guo, Ying Xu
    An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 2007, v:48, n:4, pp:329-342 [Journal]

  96. A Complex Applications Framework Supporting Tolerant Dynamic Vehicle Dispatching. [Citation Graph (, )][DBLP]


  97. Operon Prediction in Microbial Genomes Using Decision Tree Approach. [Citation Graph (, )][DBLP]


  98. Research on Operating Parameters and Energy Consumption of Cold Store Based on Rough Set Theory. [Citation Graph (, )][DBLP]


  99. An improved Particle Swarm Optimization algorithm. [Citation Graph (, )][DBLP]


  100. Prediction in Dynamic SDRAM Controller Policies. [Citation Graph (, )][DBLP]


  101. On the Performance Evaluation of Quasi-Cyclic LDPC Codes with Arbitrary Puncturing. [Citation Graph (, )][DBLP]


  102. PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes. [Citation Graph (, )][DBLP]


  103. Detect the Different Isoforms Using GeneChip Human Exon 1.0 ST Arrays. [Citation Graph (, )][DBLP]


  104. A Variable Neighborhood Descent Search Algorithm for Delay-Constrained Least-Cost Multicast Routing. [Citation Graph (, )][DBLP]


  105. Block Precoding Based ICI Mitigation Technique for OFDM System. [Citation Graph (, )][DBLP]


  106. Scientific Application Based Performance on Magic Cube. [Citation Graph (, )][DBLP]


  107. An Algorithm for Simultaneous Backbone Threading and Side-Chain Packing. [Citation Graph (, )][DBLP]


  108. Computational prediction of human proteins that can be secreted into the bloodstream. [Citation Graph (, )][DBLP]


  109. De novo computational prediction of non-coding RNA genes in prokaryotic genomes. [Citation Graph (, )][DBLP]


  110. cBar: a computer program to distinguish plasmid-derived from chromosome-derived sequence fragments in metagenomics data. [Citation Graph (, )][DBLP]


  111. Barcodes for genomes and applications. [Citation Graph (, )][DBLP]


  112. Analyses of domains and domain fusions in human proto-oncogenes. [Citation Graph (, )][DBLP]


  113. In-silico prediction of blood-secretory human proteins using a ranking algorithm. [Citation Graph (, )][DBLP]


  114. On application of directons to functional classification of genes in prokaryotes. [Citation Graph (, )][DBLP]


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