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Kiyoshi Asai: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Kinya Okada, Kiyoshi Asai, Masanori Arita
    Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions. [Citation Graph (0, 0)][DBLP]
    APBC, 2007, pp:317-326 [Conf]
  2. Masanori Arita, Koji Tsuda, Kiyoshi Asai
    Modeling splicing sites with pairwise correlations. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:27-34 [Conf]
  3. Masanori Arita, Kiyoshi Asai, Takaaki Nishioka
    Reconstructing Metabolic Pathways with New Enzyme Classification. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2000, pp:99-106 [Conf]
  4. Shusuke Saeki, Kiyoshi Asai, Katsutoshi Takahashi, Yutaka Ueno, Katsunori Isono, Hitoshi Iba
    GA-Based Inference of Euler Angles for Single Particle Analysis. [Citation Graph (0, 0)][DBLP]
    GECCO, 2003, pp:2288-2300 [Conf]
  5. Masayuki Akahoshi, Kentaro Onizuka, Masato Ishikawa, Kiyoshi Asai
    A Three-Dimensional Animation System for Protein Folding Simulation. [Citation Graph (0, 0)][DBLP]
    HICSS (5), 1994, pp:173-182 [Conf]
  6. Kentaro Onizuka, Hiroshi Tsuda, Masato Ishikawa, Akira Aiba, Kiyoshi Asai, Katunobu Ito
    Protein Structure Prediction Based on Multi-Level Description. [Citation Graph (0, 0)][DBLP]
    HICSS (5), 1994, pp:355-364 [Conf]
  7. Kentaro Onizuka, Masayuki Akahosi, Masato Ishikawa, Kiyoshi Asai
    The Multi-Scale 3D-1D Compatibility Scoring for Inverse Protein Folding Protein. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:314-321 [Conf]
  8. Kentaro Onizuka, Stephen T. C. Wong, Masato Ishikawa, Kiyoshi Asai
    A Multi-Level Description Scheme of Protein Conformation. [Citation Graph (0, 0)][DBLP]
    ISMB, 1993, pp:301-309 [Conf]
  9. Hidetoshi Tanaka, Masato Ishikawa, Kiyoshi Asai, Akihiko Konagaya
    Hidden Markov Models and Iterative Aligners: Study of Their Equivalence and Possibilities. [Citation Graph (0, 0)][DBLP]
    ISMB, 1993, pp:395-401 [Conf]
  10. Koji Tsuda, Taishin Kin, Kiyoshi Asai
    Marginalized kernels for biological sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:268-275 [Conf]
  11. Yutaka Ueno, Kiyoshi Asai
    A New Plug-In Software Architecture Applied for a Portable Molecular Structure Browser. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:329-332 [Conf]
  12. Tsuyoshi Kato, Koji Tsuda, Kentaro Tomii, Kiyoshi Asai
    A New Variational Framework for Rigid-Body Alignment. [Citation Graph (0, 0)][DBLP]
    SSPR/SPR, 2004, pp:171-179 [Conf]
  13. Yasubumi Sakakibara, Kiyoshi Asai, Kengo Sato
    Stem Kernels for RNA Sequence Analyses. [Citation Graph (0, 0)][DBLP]
    BIRD, 2007, pp:278-291 [Conf]
  14. Kiyoshi Asai, Satoru Hayamizu, Ken'ichi Handa
    Prediction of protein secondary structure by the hidden Markov model. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:2, pp:141-146 [Journal]
  15. Tsuyoshi Kato, Koji Tsuda, Kiyoshi Asai
    Selective integration of multiple biological data for supervised network inference. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2488-2495 [Journal]
  16. Hisanori Kiryu, Taku Oshima, Kiyoshi Asai
    Extracting relations between promoter sequences and their strengths from microarray data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1062-1068 [Journal]
  17. Kinya Okada, Shigehiko Kanaya, Kiyoshi Asai
    Accurate extraction of functional associations between proteins based on common interaction partners and common domains. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2043-2048 [Journal]
  18. Yasuo Tabei, Koji Tsuda, Taishin Kin, Kiyoshi Asai
    SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:14, pp:1723-1729 [Journal]
  19. Tetsushi Yada, Yasushi Totoki, Masato Ishikawa, Kiyoshi Asai, Kenta Nakai
    Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:4, pp:317-325 [Journal]
  20. Michiaki Hamada, Koji Tsuda, Taku Kudo, Taishin Kin, Kiyoshi Asai
    Mining frequent stem patterns from unaligned RNA sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:20, pp:2480-2487 [Journal]
  21. Hisanori Kiryu, Taishin Kin, Kiyoshi Asai
    Robust prediction of consensus secondary structures using averaged base pairing probability matrices. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:4, pp:434-441 [Journal]
  22. Koji Tsuda, Shotaro Akaho, Kiyoshi Asai
    Approximating Incomplete Kernel Matrices by the em Algorithm [Citation Graph (0, 0)][DBLP]
    CoRR, 2002, v:0, n:, pp:- [Journal]
  23. Koji Tsuda, Shotaro Akaho, Kiyoshi Asai
    The em Algorithm for Kernel Matrix Completion with Auxiliary Data. [Citation Graph (0, 0)][DBLP]
    Journal of Machine Learning Research, 2003, v:4, n:, pp:67-81 [Journal]
  24. Taishin Kin, Kouichirou Yamada, Goro Terai, Hiroaki Okida, Yasuhiko Yoshinari, Yukiteru Ono, Aya Kojima, Yuki Kimura, Takashi Komori, Kiyoshi Asai
    fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:145-148 [Journal]
  25. Koji Tsuda, Shinsuke Uda, Taishin Kin, Kiyoshi Asai
    Minimizing the Cross Validation Error to Mix Kernel Matrices of Heterogeneous Biological Data. [Citation Graph (0, 0)][DBLP]
    Neural Processing Letters, 2004, v:19, n:1, pp:63-72 [Journal]

  26. Multi-Task Learning via Conic Programming. [Citation Graph (, )][DBLP]


  27. A Non-parametric Bayesian Approach for Predicting RNA Secondary Structures. [Citation Graph (, )][DBLP]


  28. Murlet: a practical multiple alignment tool for structural RNA sequences. [Citation Graph (, )][DBLP]


  29. Rfold: an exact algorithm for computing local base pairing probabilities. [Citation Graph (, )][DBLP]


  30. A local multiple alignment method for detection of non-coding RNA sequences. [Citation Graph (, )][DBLP]


  31. Prediction of RNA secondary structure using generalized centroid estimators. [Citation Graph (, )][DBLP]


  32. Predictions of RNA secondary structure by combining homologous sequence information. [Citation Graph (, )][DBLP]


  33. CentroidAlign: fast and accurate aligner for structured RNAs by maximizing expected sum-of-pairs score. [Citation Graph (, )][DBLP]


  34. Directed acyclic graph kernels for structural RNA analysis. [Citation Graph (, )][DBLP]


  35. A fast structural multiple alignment method for long RNA sequences. [Citation Graph (, )][DBLP]


  36. Network-based de-noising improves prediction from microarray data. [Citation Graph (, )][DBLP]


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