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Ina Koch: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Monika Heiner, Ina Koch
    Petri Net Based Model Validation in Systems Biology. [Citation Graph (0, 0)][DBLP]
    ICATPN, 2004, pp:216-237 [Conf]
  2. Monika Heiner, Ina Koch, Jürgen Will
    Model Validation of Biological Pathways Using Petri Nets - Demonstrated for Apoptosis. [Citation Graph (0, 0)][DBLP]
    CMSB, 2003, pp:173- [Conf]
  3. Kristian Rother, Heiko Müller, Silke Trißl, Ina Koch, Thomas Steinke, Robert Preissner, Cornelius Frömmel, Ulf Leser
    Columba: Multidimensional Data Integration of Protein Annotations. [Citation Graph (0, 0)][DBLP]
    DILS, 2004, pp:156-171 [Conf]
  4. Stéphanie Boué, Martin Vingron, Evgenia V. Kriventseva, Ina Koch
    Theoretical analysis of alternative splice forms using computational methods. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:65-73 [Conf]
  5. Ina Koch, Stefan Schuster, Monika Heiner
    Simulation and analysis of metabolic networks by time-dependent Petri nets. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:208-209 [Conf]
  6. Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar
    Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2000, pp:115-120 [Conf]
  7. Ina Koch, Thomas Lengauer
    Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:167-178 [Conf]
  8. Ina Koch, Bjørn H. Junker, Monika Heiner
    Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:7, pp:1219-1226 [Journal]
  9. Patrick May, Stefan Barthel, Ina Koch
    PTGL - a web-based database application for protein topologies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:17, pp:3277-3279 [Journal]
  10. Stefan Schuster, Thomas Pfeiffer, Ferdinand Moldenhauer, Ina Koch, Thomas Dandekar
    Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:2, pp:351-361 [Journal]
  11. Silke Trißl, Kristian Rother, Heiko Müller, Thomas Steinke, Ina Koch, Robert Preissner, Cornelius Frömmel, Ulf Leser
    Columba: an integrated database of proteins, structures, and annotations. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:81- [Journal]
  12. Andrea Sackmann, Dorota Formanowicz, Piotr Formanowicz, Ina Koch, Jacek Blazewicz
    An analysis of the Petri net based model of the human body iron homeostasis process. [Citation Graph (0, 0)][DBLP]
    Computational Biology and Chemistry, 2007, v:31, n:1, pp:1-10 [Journal]
  13. Louchka Popova-Zeugmann, Monika Heiner, Ina Koch
    Time Petri Nets for Modelling and Analysis of Biochemical Networks. [Citation Graph (0, 0)][DBLP]
    Fundam. Inform., 2005, v:67, n:1-3, pp:149-162 [Journal]
  14. Ina Koch, Markus Schüler, Monika Heiner
    STEPP - Search Tool for Exploration of Petri net Paths: A new tool for Petri net-based path analysis in biochemical networks. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2004, v:5, n:, pp:- [Journal]
  15. Klaus Voss, Monika Heiner, Ina Koch
    Steady state analysis of metabolic pathways using Petri nets. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2003, v:3, n:, pp:31- [Journal]
  16. Ina Koch, Thomas Lengauer, Egon Wanke
    An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1996, v:3, n:2, pp:289-306 [Journal]
  17. Maurice Scheer, Frank Klawonn, Richard Münch, Andreas Grote, Karsten Hiller, Claudia Choi, Ina Koch, Max Schobert, Elisabeth Härtig, Ulrich Klages, Dieter Jahn
    JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:510-515 [Journal]
  18. Ina Koch
    Enumerating all connected maximal common subgraphs in two graphs. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2001, v:250, n:1-2, pp:1-30 [Journal]

  19. A review of bioinformatics education in Germany. [Citation Graph (, )][DBLP]


  20. Modularization of biochemical networks based on classification of Petri net t-invariants. [Citation Graph (, )][DBLP]


  21. Application of Petri net based analysis techniques to signal transduction pathways. [Citation Graph (, )][DBLP]


  22. Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets. [Citation Graph (, )][DBLP]


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