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Richard Hughey: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Eric Rice, Richard Hughey
    A New Iterative Structure for Hardware Division: The Parallel Paths Algorithm. [Citation Graph (0, 0)][DBLP]
    IEEE Symposium on Computer Arithmetic, 2003, pp:54-62 [Conf]
  2. Eric Rice, Richard Hughey
    Multiprecision Division on an 8-bit Processor. [Citation Graph (0, 0)][DBLP]
    IEEE Symposium on Computer Arithmetic, 1997, pp:74-81 [Conf]
  3. David M. Dahle, Jeffrey D. Hirschberg, Kevin Karplus, Hansjörg Keller, Eric Rice, Don Speck, Douglas H. Williams, Richard Hughey
    Kestrel: Design of an 8-bit SIMD Parallel Processor. [Citation Graph (0, 0)][DBLP]
    ARVLSI, 1997, pp:145-0 [Conf]
  4. Andrea Di Blas, Richard Hughey
    Explicit SIMD Programming for Asynchronous Applications. [Citation Graph (0, 0)][DBLP]
    ASAP, 2000, pp:258-267 [Conf]
  5. Jeffrey D. Hirschberg, Richard Hughey, Kevin Karplus, Don Speck
    Kestrel: A Programmable Array for Sequence Analysis. [Citation Graph (0, 0)][DBLP]
    ASAP, 1996, pp:25-34 [Conf]
  6. Richard Hughey
    Parallel Sequence Comparison and Alignment. [Citation Graph (0, 0)][DBLP]
    ASAP, 1995, pp:137-140 [Conf]
  7. Richard Hughey, Andrea Di Blas
    The UCSC Kestrel Application-Unspecific Processor. [Citation Graph (0, 0)][DBLP]
    ASAP, 2006, pp:163-168 [Conf]
  8. Yasubumi Sakakibara, Michael Brown, Richard Hughey, I. Saira Mian, Kimmen Sjölander, Rebecca C. Underwood, David Haussler
    Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars. [Citation Graph (0, 0)][DBLP]
    CPM, 1994, pp:289-306 [Conf]
  9. Richard Hughey, Daniel P. Lopresti
    B-SYS: A 470-Processor Programmable Systolic Array. [Citation Graph (0, 0)][DBLP]
    ICPP (1), 1991, pp:580-583 [Conf]
  10. Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler
    Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. [Citation Graph (0, 0)][DBLP]
    ISMB, 1993, pp:47-55 [Conf]
  11. Leslie Grate, Mark Herbster, Richard Hughey, David Haussler, I. Saira Mian, Harry Noller
    RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:138-146 [Conf]
  12. J. Alicia Grice, Richard Hughey, Don Speck
    Parallel Sequence Alignment in Limited Space. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:145-153 [Conf]
  13. David M. Dahle, Leslie Grate, Eric Rice, Richard Hughey
    The UCSC Kestrel General Purpose Parallel Processor. [Citation Graph (0, 0)][DBLP]
    PDPTA, 1999, pp:1243-1249 [Conf]
  14. Thomas E. Ferrin, Bruce A. Foster, Richard Hughey
    High Performance Computing for Computational Biology - Session Introduction. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:238-239 [Conf]
  15. Leslie Grate, Mark Diekhans, David M. Dahle, Richard Hughey
    Sequence Analysis With the Kestrel SIMD Parallel Processor. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:263-274 [Conf]
  16. Eric Rice, Richard Hughey
    Molecular Fingerprinting on the SIMD Parallel Processor Kestrel. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:323-334 [Conf]
  17. Richard Hughey, Daniel P. Lopresti
    A software approach to fault detection on programmable systolic arrays. [Citation Graph (0, 0)][DBLP]
    SPDP, 1990, pp:523-526 [Conf]
  18. Christian Barrett, Richard Hughey, Kevin Karplus
    Scoring hidden Markov models. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:2, pp:191-199 [Journal]
  19. Melissa S. Cline, Richard Hughey, Kevin Karplus
    Predicting reliable regions in protein sequence alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:2, pp:306-314 [Journal]
  20. J. Alicia Grice, Richard Hughey, Don Speck
    Reduced space sequence alignment. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:1, pp:45-53 [Journal]
  21. Richard Hughey
    Parallel hardware for sequence comparison and alignment. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:6, pp:473-479 [Journal]
  22. Richard Hughey, Anders Krogh
    Hidden Markov models for sequence analysis: extension and analysis of the basic method. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:2, pp:95-107 [Journal]
  23. Rachel Karchin, Richard Hughey
    Weighting hidden Markov models for maximum discrimination. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:9, pp:772-782 [Journal]
  24. Kevin Karplus, Christian Barrett, Richard Hughey
    Hidden Markov models for detecting remote protein homologies. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:10, pp:846-856 [Journal]
  25. Kevin Karplus, Rachel Karchin, George Shackelford, Richard Hughey
    Calibrating E-values for hidden Markov models using reverse-sequence null models. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:22, pp:4107-4115 [Journal]
  26. Kimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler
    Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:4, pp:327-345 [Journal]
  27. C. Tarnas, Richard Hughey
    Reduced space hidden Markov model training. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:5, pp:401-406 [Journal]
  28. Raymond Wheeler, Richard Hughey
    Optimizing reduced-space sequence analysis. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:12, pp:1082-1090 [Journal]
  29. Andrea Di Blas, Arun Jagota, Richard Hughey
    A Range-Compaction Heuristic for Graph Coloring. [Citation Graph (0, 0)][DBLP]
    J. Heuristics, 2003, v:9, n:6, pp:489-506 [Journal]
  30. J. Z. Dalgaard, M. J. Moser, Richard Hughey, I. Saira Mian
    Statistic Modeling, Phylogenetic Analysis and Strjucture Prediction of a Protein Splicing Domain Common to Infeins and Hedgehog Proteins. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:2, pp:193-0 [Journal]
  31. Andrea Di Blas, Arun Jagota, Richard Hughey
    Optimizing neural networks on SIMD parallel computers. [Citation Graph (0, 0)][DBLP]
    Parallel Computing, 2005, v:31, n:1, pp:97-115 [Journal]
  32. Richard Hughey
    Concurrent Error Detection on Programmable Systolic Arrays. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Computers, 1993, v:42, n:6, pp:752-756 [Journal]
  33. Andrea Di Blas, David M. Dahle, Mark Diekhans, Leslie Grate, Jeffrey D. Hirschberg, Kevin Karplus, Hansjörg Keller, Mark Kendrick, Francisco J. Mesa-Martinez, David Pease, Eric Rice, Angela Schultz, Don Speck, Richard Hughey
    The UCSC Kestrel Parallel Processor. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 2005, v:16, n:1, pp:80-92 [Journal]

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