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Thomas Lengauer: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Thomas Lengauer, Egon Wanke
    Efficient Analysis of Graph Properties on Context-free Graph Languages (Extended Abstract). [Citation Graph (1, 0)][DBLP]
    ICALP, 1988, pp:379-393 [Conf]
  2. Thomas Lengauer, Robert Endre Tarjan
    A Fast Algorithm for Finding Dominators in a Flowgraph. [Citation Graph (1, 0)][DBLP]
    ACM Trans. Program. Lang. Syst., 1979, v:1, n:1, pp:121-141 [Journal]
  3. Thomas Lengauer
    Exploiting Hierarchy in VLSI Design. [Citation Graph (0, 0)][DBLP]
    Aegean Workshop on Computing, 1986, pp:180-193 [Conf]
  4. Rolf Müller, Thomas Lengauer
    Linear Algorithms For Two CMOS Layout Problems. [Citation Graph (0, 0)][DBLP]
    Aegean Workshop on Computing, 1986, pp:121-132 [Conf]
  5. Thomas Lengauer
    Computational Biology at the Beginning of the Post-genomic Era. [Citation Graph (0, 0)][DBLP]
    Informatics, 2001, pp:341-355 [Conf]
  6. Thomas Lengauer
    Informatik in den technischen Disziplinen. [Citation Graph (0, 0)][DBLP]
    Perspektiven der Informatik, 1993, pp:13-16 [Conf]
  7. Thomas Lengauer
    Informatik in den Naturwissenschaften. [Citation Graph (0, 0)][DBLP]
    Perspektiven der Informatik, 1993, pp:16-20 [Conf]
  8. Franz Höfting, Thomas Lengauer, Egon Wanke
    Processing of Hierarchically Defined Graphs and Graph Families. [Citation Graph (0, 0)][DBLP]
    Data Structures and Efficient Algorithms, 1992, pp:44-69 [Conf]
  9. Kirsten Roomp, Niko Beerenwinkel, Tobias Sing, Eugen Schülter, Joachim Büch, Saleta Sierra-Aragon, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig
    Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV. [Citation Graph (0, 0)][DBLP]
    DILS, 2006, pp:185-194 [Conf]
  10. Mario Albrecht, Carola Huthmacher, Silvio C. E. Tosatto, Thomas Lengauer
    Decomposing protein networks into domain-domain interactions. [Citation Graph (0, 0)][DBLP]
    ECCB/JBI, 2005, pp:221- [Conf]
  11. Thomas Lengauer
    Editorial. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:1- [Conf]
  12. Thomas Lengauer
    ECCB 2002 Organization. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:2-3 [Conf]
  13. Thomas Lengauer
    Analyzing resistance phenomena in HIV with bioinformatics methods. [Citation Graph (0, 0)][DBLP]
    ECCB, 2003, pp:92- [Conf]
  14. Ralf Heckmann, Thomas Lengauer
    Computing Upper and Lower Bounds on Textile Nesting Problems. [Citation Graph (0, 0)][DBLP]
    ESA, 1996, pp:392-405 [Conf]
  15. Thomas Lengauer
    Computational Biology - Algorithms and More. [Citation Graph (0, 0)][DBLP]
    ESA, 2000, pp:9-19 [Conf]
  16. Thomas Lengauer
    The Complexity of Compacting Hierarchically Specified Layouts of Integrated Circuits (Preliminary Version) [Citation Graph (0, 0)][DBLP]
    FOCS, 1982, pp:358-368 [Conf]
  17. Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer
    Improving Fold Recognition of Protein Threading by Experimental Distance Constraints. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:68-77 [Conf]
  18. Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
    Identifying drug resistance-associated patterns in HIV genotypes. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:126-130 [Conf]
  19. Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer
    A new Method for Unification of Existing Protein Structure- and Sequence-Families. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:78-84 [Conf]
  20. Daniel Hanisch, Ralf Zimmer, Thomas Lengauer
    ProML - the Protein Markup Language for specification of protein sequences, structures and families. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:58-67 [Conf]
  21. Robert Küffner, Ralf Zimmer, Thomas Lengauer
    Pathway analysis in metabolic databases via differetial metabolic display (DMD). [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:141-147 [Conf]
  22. Christian Lemmen, Claus Hiller, Thomas Lengauer
    RigFit: a new approach to superimposing ligand molecules. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1997, pp:103-105 [Conf]
  23. Christian Lemmen, Thomas Lengauer
    Time-Efficient Flexible Superposition of Medium-Sized Molecules and Molecular Fragments. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:257-259 [Conf]
  24. Thomas Lengauer
    Bioinformatics Problems Along the Process Line from Genomic Data to New Drugs. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2000, pp:189- [Conf]
  25. Matthias Rarey, Bernd Kramer, Thomas Lengauer
    Docking of hydrophobic ligands with interaction-based matching algorithms. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  26. Alexander Zien, Gunnar Rätsch, Sebastian Mika, Bernhard Schölkopf, Christian Lemmen, Alex J. Smola, Thomas Lengauer, Klaus-Robert Müller
    Engineering Support Vector Machine Kerneis That Recognize Translation Initialion Sites. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1999, pp:37-43 [Conf]
  27. Ingolf Sommer, Niklas von Öhsen, Alexander Zien, Ralf Zimmer, Thomas Lengauer
    Confidence Measures for Fold Recognition. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 2001, pp:26-33 [Conf]
  28. Franz-Josef Brandenburg, Michael Jünger, Petra Mutzel, Thomas Lengauer
    Algorithmen zum automatischen Zeichnen von Graphen im Rahmen des DFG-Schwerpunkts Effiziente Algorithmen für diskrete Probleme und ihre Anwendungen. [Citation Graph (0, 0)][DBLP]
    GI Jahrestagung, 1997, pp:58-67 [Conf]
  29. Thomas Lengauer
    Algorithmische Spezifikation von symbolischen Layouts integrierter Schaltkreise. [Citation Graph (0, 0)][DBLP]
    GI Jahrestagung (Fachgespräche), 1984, pp:5-16 [Conf]
  30. Thomas Lengauer
    Hierarchische Darstellung geometrischer Objekte und ihre algorithmische Bedeutung. [Citation Graph (0, 0)][DBLP]
    GI Jahrestagung (1), 1986, pp:456-469 [Conf]
  31. Thomas Lengauer
    DFG-Schwerpunkt: Informatikmethoden zur Analyse und Interpretation großer genomischer Datenmengen. [Citation Graph (0, 0)][DBLP]
    GI Jahrestagung, 1997, pp:76-84 [Conf]
  32. Thomas Lengauer
    Hierarchical Planary Testing Algorithms. [Citation Graph (0, 0)][DBLP]
    ICALP, 1986, pp:215-225 [Conf]
  33. Thomas Lengauer, Dirk Theune
    Efficient Algorithms for Path Problems with Gernal Cost Citeria. [Citation Graph (0, 0)][DBLP]
    ICALP, 1991, pp:314-326 [Conf]
  34. Elof Frank, Thomas Lengauer
    APPlaUSE: Area and performance optimization in a unified placement and synthesis environment. [Citation Graph (0, 0)][DBLP]
    ICCAD, 1995, pp:662-667 [Conf]
  35. Thomas Lengauer, Rolf Müller
    A Robust Framework for Hierarchical Floorplanning with Integrated Global Wiring. [Citation Graph (0, 0)][DBLP]
    ICCAD, 1990, pp:148-151 [Conf]
  36. Dirk Theune, Ralf Thiele, Thomas Lengauer, Anja Feldmann
    HERO: hierarchical EMC-constrained routing. [Citation Graph (0, 0)][DBLP]
    ICCAD, 1992, pp:468-472 [Conf]
  37. Marcus Peinado, Thomas Lengauer
    Parallel 'Go with the Winners' Algorithms in the LogP Model. [Citation Graph (0, 0)][DBLP]
    IPPS, 1997, pp:656-664 [Conf]
  38. Niko Beerenwinkel, Thomas Lengauer, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Joachim Selbig
    Methods for optimizing antiviral combination therapies. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:16-25 [Conf]
  39. Iris Antes, Shirley W. I. Siu, Thomas Lengauer
    DynaPred: A structure and sequence based method for the prediction of MHC class I binding peptide sequences and conformations. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:16-24 [Conf]
  40. Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer
    Co-clustering of biological networks and gene expression data. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:145-154 [Conf]
  41. Ina Koch, Thomas Lengauer
    Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:167-178 [Conf]
  42. Matthias Rarey, Bernd Kramer, Thomas Lengauer
    Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:300-308 [Conf]
  43. Ralf Thiele, Ralf Zimmer, Thomas Lengauer
    Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:384-392 [Conf]
  44. Alexander Zien, Thomas Aigner, Ralf Zimmer, Thomas Lengauer
    Centralization: a new method for the normalization of gene expression data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:323-331 [Conf]
  45. Alexander Zien, Robert Küffner, Ralf Zimmer, Thomas Lengauer
    Analysis of Gene Expression Data with Pathway Scores. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:407-417 [Conf]
  46. Thomas Lengauer
    Algorithmic Research Problems in Molecular Bioinformatics. [Citation Graph (0, 0)][DBLP]
    ISTCS, 1993, pp:177-192 [Conf]
  47. Tobias Sing, Niko Beerenwinkel, Thomas Lengauer, Valentina Svicher, Francesca Ceccherini-Silberstein, Carlo-Federico Perno
    Supervised and Unsupervised Approaches for Analyzing Covariation and Phenotypic Impact of HIV Drug Resistance Mutations. [Citation Graph (0, 0)][DBLP]
    LWA, 2005, pp:234-239 [Conf]
  48. Tobias Sing, Valentina Svicher, Niko Beerenwinkel, Francesca Ceccherini-Silberstein, Martin Däumer, Rolf Kaiser, Hauke Walter, Klaus Korn, Daniel Hoffmann, Mark Oette, Jürgen K. Rockstroh, Gerd Fätkenheuer, Carlo-Federico Perno, Thomas Lengauer
    Characterization of Novel HIV Drug Resistance Mutations Using Clustering, Multidimensional Scaling and SVM-Based Feature Ranking. [Citation Graph (0, 0)][DBLP]
    PKDD, 2005, pp:285-296 [Conf]
  49. Christian Lemmen, Alexander Zien, Ralf Zimmer, Thomas Lengauer
    Application of Parameter Optimization to Molecular Comparison Problems. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 1999, pp:482-493 [Conf]
  50. Marcus Peinado, Thomas Lengauer
    `Go with the winners' Generators with Applications to Molecular Modeling. [Citation Graph (0, 0)][DBLP]
    RANDOM, 1997, pp:135-149 [Conf]
  51. Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
    Learning multiple evolutionary pathways from cross-sectional data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:36-44 [Conf]
  52. Alexander Zien, Ralf Zimmer, Thomas Lengauer
    A simple iterative approach to parameter optimization. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2000, pp:318-327 [Conf]
  53. Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer
    Microarrays: how many do you need? [Citation Graph (0, 0)][DBLP]
    RECOMB, 2002, pp:321-330 [Conf]
  54. Ralf Zimmer, Thomas Lengauer
    Fast and numerically stable parametric alignment of biosequences. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:344-353 [Conf]
  55. Tobias Sing, Niko Beerenwinkel, Thomas Lengauer
    Learning Mixtures of Localized Rules by Maximizing the Area Under the ROC Curve. [Citation Graph (0, 0)][DBLP]
    ROCAI, 2004, pp:89-96 [Conf]
  56. Jörg Heistermann, Thomas Lengauer
    Efficient Automatic Part Nesting on Irregular and Inhomogeneous Surfaces. [Citation Graph (0, 0)][DBLP]
    SODA, 1993, pp:251-259 [Conf]
  57. Thomas Lengauer
    Efficient Algorithms for Finding Minimum Spanning Forests of Hierarchically Defined Graphs. [Citation Graph (0, 0)][DBLP]
    STACS, 1986, pp:153-170 [Conf]
  58. Thomas Lengauer, Klaus W. Wagner
    The Correlation Between the Complexities of the Nonhierarchical and Hierarchical Versions of Graph Problems. [Citation Graph (0, 0)][DBLP]
    STACS, 1987, pp:100-113 [Conf]
  59. John R. Gilbert, Thomas Lengauer, Robert Endre Tarjan
    The Pebbling Problem is Complete in Polynomial Space [Citation Graph (0, 0)][DBLP]
    STOC, 1979, pp:237-248 [Conf]
  60. Thomas Lengauer, Robert Endre Tarjan
    Upper and Lower Bounds on Time-Space Tradeoffs [Citation Graph (0, 0)][DBLP]
    STOC, 1979, pp:262-277 [Conf]
  61. Marcus Peinado, Thomas Lengauer
    Random Generation of Embedded Graphs and an Extension to Dobrushin Uniqueness (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    STOC, 1998, pp:176-185 [Conf]
  62. Thomas Lengauer, Dirk Theune
    Unstructured Path Problems and the Making of Semirings (Preliminary Version). [Citation Graph (0, 0)][DBLP]
    WADS, 1991, pp:189-200 [Conf]
  63. Thomas Lengauer
    Invited Lecture: Discrete Optimization Methods for Packing Problems in Two and Three Dimensions - With Applications in the Textile and Car Manufacturing Industries. [Citation Graph (0, 0)][DBLP]
    WG, 1999, pp:27-28 [Conf]
  64. Thomas Lengauer
    Black-White Pebbles and Graph Separation. [Citation Graph (0, 0)][DBLP]
    Acta Inf., 1981, v:16, n:, pp:465-475 [Journal]
  65. Thomas Lengauer, Ralf Zimmer
    Protein Structure Prediction Methods for Drug Design. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2000, v:1, n:3, pp:275-288 [Journal]
  66. Mario Albrecht, Thomas Lengauer
    Pyranose Oxidase Identified as A Member of the GMC Oxidoreductase Family. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:10, pp:1216-1220 [Journal]
  67. Mario Albrecht, Thomas Lengauer, Stefan Schreiber
    Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:17, pp:2171-2175 [Journal]
  68. Adrian Alexa, Jörg Rahnenführer, Thomas Lengauer
    Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:13, pp:1600-1607 [Journal]
  69. Niko Beerenwinkel, Jörg Rahnenführer, Rolf Kaiser, Daniel Hoffmann, Joachim Selbig, Thomas Lengauer
    Mtreemix: a software package for learning and using mixture models of mutagenetic trees. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:2106-2107 [Journal]
  70. Niko Beerenwinkel, Tobias Sing, Thomas Lengauer, Jörg Rahnenführer, Kirsten Roomp, Igor Savenkov, Roman Fischer, Daniel Hoffmann, Joachim Selbig, Klaus Korn, Hauke Walter, Thomas Berg, Patrick Braun, Gerd Fätkenheuer, Mark Oette, Jürgen K. Rockstroh, Bernd Kupfer, Rolf Kaiser, Martin Däumer
    Computational methods for the design of effective therapies against drug resistant HIV strains. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:21, pp:3943-3950 [Journal]
  71. Christoph Bock, Sabine Reither, Thomas Mikeska, Martina Paulsen, Jörn Walter, Thomas Lengauer
    BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:21, pp:4067-4068 [Journal]
  72. Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer
    The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:2, pp:268-270 [Journal]
  73. Burkhard Heil, Jost Ludwig, Hella Lichtenberg-Fraté, Thomas Lengauer
    Computational recognition of potassium channel sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:13, pp:1562-1568 [Journal]
  74. Robert Küffner, Ralf Zimmer, Thomas Lengauer
    Pathway analysis in metabolic databases via differential metabolic display (DMD). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:9, pp:825-836 [Journal]
  75. Thomas Lengauer
    Editorial. The Seventh International Conference on Intelligent Systems for Molecular Biology (ISMB'99). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:10, pp:775- [Journal]
  76. Jochen Maydt, Thomas Lengauer
    Recco: recombination analysis using cost optimization. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:9, pp:1064-1071 [Journal]
  77. Niklas von Öhsen, Ingolf Sommer, Ralf Zimmer, Thomas Lengauer
    Arby: automatic protein structure prediction using profile-profile alignment and confidence measures. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:14, pp:2228-2235 [Journal]
  78. Jörg Rahnenführer, Niko Beerenwinkel, Wolfgang A. Schulz, Christian Hartmann, Andreas von Deimling, Bernd Wullich, Thomas Lengauer
    Estimating cancer survival and clinical outcome based on genetic tumor progression scores. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:10, pp:2438-2446 [Journal]
  79. Matthias Rarey, Bernd Kramer, Thomas Lengauer
    Docking of hydrophobic ligands with interaction-based matching algorithms. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:3, pp:243-250 [Journal]
  80. Joachim Selbig, Heinz-Theodor Mevissen, Thomas Lengauer
    Decision tree-based formation of consensus protein secondary structure prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:12, pp:1039-1046 [Journal]
  81. Ingolf Sommer, Jörg Rahnenführer, Francisco S. Domingues, U. de Lichtenberg, Thomas Lengauer
    Predicting protein structure classes from function predictions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:5, pp:770-776 [Journal]
  82. Ingolf Sommer, Alexander Zien, Niklas von Öhsen, Ralf Zimmer, Thomas Lengauer
    Confidence measures for protein fold recognition. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:6, pp:802-812 [Journal]
  83. Tobias Sing, Oliver Sander, Niko Beerenwinkel, Thomas Lengauer
    ROCR: visualizing classifier performance in R. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:20, pp:3940-3941 [Journal]
  84. Andrew E. Torda, Thomas Lengauer
    Editorial. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:10, pp:1157- [Journal]
  85. Alexander Zien, Gunnar Rätsch, Sebastian Mika, Bernhard Schölkopf, Thomas Lengauer, Klaus-Robert Müller
    Engineering support vector machine kernels that recognize translation initiation sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:9, pp:799-807 [Journal]
  86. Andreas Schlicker, Carola Huthmacher, Fidel Ramírez, Thomas Lengauer, Mario Albrecht
    Functional evaluation of domain-domain interactions and human protein interaction networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:7, pp:859-865 [Journal]
  87. Andreas Hahn, Jörg Rahnenführer, Priti Talwar, Thomas Lengauer
    Confirmation of human protein interaction data by human expression data. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:112- [Journal]
  88. Oliver Sander, Ingolf Sommer, Thomas Lengauer
    Local protein structure prediction using discriminative models. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:14- [Journal]
  89. Hongbo Zhu, Francisco S. Domingues, Ingolf Sommer, Thomas Lengauer
    NOXclass: prediction of protein-protein interaction types. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:27- [Journal]
  90. Thomas Lengauer, Egon Wanke
    Efficient processing of hierarchical graphs for engineering design. [Citation Graph (0, 0)][DBLP]
    Bulletin of the EATCS, 1988, v:35, n:, pp:143-157 [Journal]
  91. Niko Beerenwinkel, Barbara Schmidt, Hauke Walter, Rolf Kaiser, Thomas Lengauer, Daniel Hoffmann, Klaus Korn, Joachim Selbig
    Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests. [Citation Graph (0, 0)][DBLP]
    IEEE Intelligent Systems, 2001, v:16, n:6, pp:35-41 [Journal]
  92. Thomas Lengauer
    Cube-Connected Cycles - Shuffle Exchange Graph - Das aktuelle Schlagwort. [Citation Graph (0, 0)][DBLP]
    Informatik Spektrum, 1982, v:5, n:3, pp:192-194 [Journal]
  93. Thomas Lengauer, Robert Endre Tarjan
    The Space Complexity of Pebble Games on Trees. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 1980, v:10, n:4/5, pp:184-188 [Journal]
  94. Mario Albrecht, Daniel Hanisch, Ralf Zimmer, Thomas Lengauer
    Improving fold recognition of protein threading by experimental distance constraints. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2002, v:2, n:, pp:30- [Journal]
  95. Jan Freudenberg, Ralf Zimmer, Daniel Hanisch, Thomas Lengauer
    A hypergraph-based method for unification of existing protein structure- and sequence-families. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2002, v:2, n:, pp:31- [Journal]
  96. Daniel Hanisch, Ralf Zimmer, Thomas Lengauer
    ProML - the Protein Markup Language for specification of protein sequences, structures and families. [Citation Graph (0, 0)][DBLP]
    In Silico Biology, 2002, v:2, n:, pp:29- [Journal]
  97. Thomas Lengauer
    The DFG Priority Program "Informatics Methods for the Analysis and Interpretation of Large Genomic Datasets". [Citation Graph (0, 0)][DBLP]
    it - Information Technology, 2005, v:47, n:4, pp:226-231 [Journal]
  98. Thomas Lengauer
    Hierarchical planarity testing algorithms. [Citation Graph (0, 0)][DBLP]
    J. ACM, 1989, v:36, n:3, pp:474-509 [Journal]
  99. Thomas Lengauer, Robert Endre Tarjan
    Asymptotically tight bounds on time-space trade-offs in a pebble game. [Citation Graph (0, 0)][DBLP]
    J. ACM, 1982, v:29, n:4, pp:1087-1130 [Journal]
  100. Thomas Lengauer, Egon Wanke
    Efficient Decision Procedures for Graph Properties on Centext-Free Graph Languages. [Citation Graph (0, 0)][DBLP]
    J. ACM, 1993, v:40, n:2, pp:368-393 [Journal]
  101. Thomas Lengauer
    On the Solution of Inequality Systems Relevant to IC-Layout. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 1984, v:5, n:3, pp:408-421 [Journal]
  102. Thomas Lengauer
    Efficient Algorithms for Finding Minimum Spanning Forests of Hierarchically Defined Graphs. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 1987, v:8, n:2, pp:260-284 [Journal]
  103. Sally A. Hindle, Matthias Rarey, Christian Buning, Thomas Lengauer
    Flexible docking under pharmacophore type constraints. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 2002, v:16, n:2, pp:129-149 [Journal]
  104. Christian Lemmen, Claus Hiller, Thomas Lengauer
    RigFit: A new approach to superimposing ligand molecules. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 1998, v:12, n:5, pp:491-502 [Journal]
  105. Christian Lemmen, Thomas Lengauer
    Computational methods for the structural alignment of molecules. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 2000, v:14, n:3, pp:215-232 [Journal]
  106. Christian Lemmen, Thomas Lengauer
    Time-efficient flexible superposition of medium-sized molecules. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 1997, v:11, n:4, pp:357-368 [Journal]
  107. Matthias Rarey, Bernd Kramer, Thomas Lengauer
    Multiple automatic base selection: Protein-ligand docking based on incremental construction without manual intervention. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 1997, v:11, n:4, pp:369-384 [Journal]
  108. Matthias Rarey, Stephan Wefing, Thomas Lengauer
    Placement of medium-sized molecular fragments into active sites of proteins. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 1996, v:10, n:1, pp:41-54 [Journal]
  109. Niko Beerenwinkel, Jörg Rahnenführer, Martin Däumer, Daniel Hoffmann, Rolf Kaiser, Joachim Selbig, Thomas Lengauer
    Learning Multiple Evolutionary Pathways from Cross-Sectional Data. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:584-598 [Journal]
  110. Ina Koch, Thomas Lengauer, Egon Wanke
    An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1996, v:3, n:2, pp:289-306 [Journal]
  111. Thomas Lengauer
    Preface: Special RECOMB 2001 Issue. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:2, pp:147-148 [Journal]
  112. Alexander Zien, Juliane Fluck, Ralf Zimmer, Thomas Lengauer
    Microarrays: How Many Do You Need? [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2003, v:10, n:3/4, pp:653-667 [Journal]
  113. Alexander Zien, Ralf Zimmer, Thomas Lengauer
    A Simple Iterative Approach to Parameter Optimization. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:3-4, pp:483-501 [Journal]
  114. Iris Antes, Christian Merkwirth, Thomas Lengauer
    POEM: Parameter Optimization Using Ensemble Methods: Application to Target Specific Scoring Functions. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2005, v:45, n:5, pp:1291-1302 [Journal]
  115. Andreas Kämper, Joannis Apostolakis, Matthias Rarey, Christel M. Marian, Thomas Lengauer
    Fully Automated Flexible Docking of Ligands into Flexible Synthetic Receptors Using Forward and Inverse Docking Strategies. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:2, pp:903-911 [Journal]
  116. Christian Merkwirth, Thomas Lengauer
    Automatic Generation of Complementary Descriptors with Molecular Graph Networks. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2005, v:45, n:5, pp:1159-1168 [Journal]
  117. Christian Merkwirth, Harald Mauser, Tanja Schulz-Gasch, Olivier Roche, Martin Stahl, Thomas Lengauer
    Ensemble Methods for Classification in Cheminformatics. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2004, v:44, n:6, pp:1971-1978 [Journal]
  118. Dirk Neumann, Oliver Kohlbacher, Christian Merkwirth, Thomas Lengauer
    A Fully Computational Model for Predicting Percutaneous Drug Absorption. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:1, pp:424-429 [Journal]
  119. Andreas Steffen, Andreas Kämper, Thomas Lengauer
    Flexible Docking of Ligands into Synthetic Receptors Using a Two-Sided Incremental Construction Algorithm. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:4, pp:1695-1703 [Journal]
  120. Thomas Lengauer, Klaus W. Wagner
    The Correlation between the Complexities of the Nonhierarchical and Hierarchical Versions of Graph Problems. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 1992, v:44, n:1, pp:63-93 [Journal]
  121. Marcus Peinado, Thomas Lengauer
    Parallel 'go with the winners' algorithms in distributed memory models. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2003, v:63, n:9, pp:801-814 [Journal]
  122. Ralf Hofestädt, Fritz Krückeberg, Thomas Lengauer
    1. Fachtagung ``Informatik in den Biowissenschaften''. [Citation Graph (0, 0)][DBLP]
    KI, 1993, v:7, n:3, pp:31- [Journal]
  123. Niko Beerenwinkel, Martin Däumer, Mark Oette, Klaus Korn, Daniel Hoffmann, Rolf Kaiser, Thomas Lengauer, Joachim Selbig, Hauke Walter
    Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3850-3855 [Journal]
  124. John R. Gilbert, Thomas Lengauer, Robert Endre Tarjan
    The Pebbling Problem is Complete in Polynomial Space. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1980, v:9, n:3, pp:513-524 [Journal]
  125. Thomas Lengauer, Egon Wanke
    Efficient Solution of Connectivity Problems on Hierarchically Defined Graphs. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1988, v:17, n:6, pp:1063-1080 [Journal]
  126. Jürgen Doenhardt, Thomas Lengauer
    Algorithmic Aspects of One-Dimensional Layout Compaction. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. on CAD of Integrated Circuits and Systems, 1987, v:6, n:5, pp:863-878 [Journal]
  127. Jörg Heisterman, Thomas Lengauer
    The efficient solution of integer programs for hierarchical global routing. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. on CAD of Integrated Circuits and Systems, 1991, v:10, n:6, pp:748-753 [Journal]
  128. Thomas Lengauer, Rolf Müller
    Robust and accurate hierarchical floorplanning with integrated global wiring. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. on CAD of Integrated Circuits and Systems, 1993, v:12, n:6, pp:802-809 [Journal]
  129. Dirk Theune, Ralf Thiele, W. John, Thomas Lengauer
    Robust methods for EMC-driven routing. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. on CAD of Integrated Circuits and Systems, 1994, v:13, n:11, pp:1366-1378 [Journal]
  130. Thomas Lengauer, Klaus W. Wagner
    The Binary Network Flow Problem is Logspace Complete for P. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1990, v:75, n:3, pp:357-363 [Journal]

  131. Structural Descriptors of Protein-Protein Binding Sites. [Citation Graph (, )][DBLP]


  132. Applications of semantic similarity measures. [Citation Graph (, )][DBLP]


  133. An integrative approach for predicting interactions of protein regions. [Citation Graph (, )][DBLP]


  134. Semi-Supervised Learning for Improving Prediction of HIV Drug Resistance. [Citation Graph (, )][DBLP]


  135. Functional Evaluation of Domain-Domain Interactions and Human Protein Interaction Networks. [Citation Graph (, )][DBLP]


  136. Multi-task learning for HIV therapy screening. [Citation Graph (, )][DBLP]


  137. Selecting anti-HIV therapies based on a variety of genomic and clinical factors. [Citation Graph (, )][DBLP]


  138. Moment invariants as shape recognition technique for comparing protein binding sites. [Citation Graph (, )][DBLP]


  139. Conformational analysis of alternative protein structures. [Citation Graph (, )][DBLP]


  140. Computational epigenetics. [Citation Graph (, )][DBLP]


  141. Computing topological parameters of biological networks. [Citation Graph (, )][DBLP]


  142. Rtreemix: an R package for estimating evolutionary pathways and genetic progression scores. [Citation Graph (, )][DBLP]


  143. Integrating expression data with domain interaction networks. [Citation Graph (, )][DBLP]


  144. DASMI: exchanging, annotating and assessing molecular interaction data. [Citation Graph (, )][DBLP]


  145. Permutation importance: a corrected feature importance measure. [Citation Graph (, )][DBLP]


  146. Stability analysis of mixtures of mutagenetic trees. [Citation Graph (, )][DBLP]


  147. A new measure for functional similarity of gene products based on Gene Ontology. [Citation Graph (, )][DBLP]


  148. Improving the quality of protein structure models by selecting from alignment alternatives. [Citation Graph (, )][DBLP]


  149. Predicting MHC class I epitopes in large datasets. [Citation Graph (, )][DBLP]


  150. Chasing the AIDS virus. [Citation Graph (, )][DBLP]


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