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Rita Casadio: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Piero Fariselli, Rita Casadio
    Pseudodihedral Potential of Protein Residues and the Prediction of Folding. [Citation Graph (0, 0)][DBLP]
    BCEC, 1997, pp:112-121 [Conf]
  2. Emidio Capriotti, Piero Fariselli, Remo Calabrese, Rita Casadio
    Predicting protein stability changes from sequences using support vector machines. [Citation Graph (0, 0)][DBLP]
    ECCB/JBI, 2005, pp:58- [Conf]
  3. P. Arrigo, Piero Fariselli, Rita Casadio
    The Identification of Locally Ordered Features an Completely unaligned Genomic Sequences by using an Unsupervised Neural Classifier. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1996, pp:156-158 [Conf]
  4. P. Arrigo, Piero Fariselli, Rita Casadio
    Self-Organizing Neural Maps of the Coding Sequences of G-protein-coupled Receptors Reveal Local Domains Associated with Potentially Functional Determinants in the Proteins. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:44-47 [Conf]
  5. Emidio Capriotti, Piero Fariselli, Rita Casadio
    A neural-network-based method for predicting protein stability changes upon single point mutations. [Citation Graph (0, 0)][DBLP]
    ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:63-68 [Conf]
  6. Rita Casadio, Mario Compiani, Piero Fariselli, Pier Luigi Martelli
    A Data Base of Minimally Frustrated Alpha-Helical Segments Extracted from Proteins According to an Entropy Criterion. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:68-76 [Conf]
  7. Rita Casadio, Mario Compiani, Piero Fariselli, Francesco Vivarelli
    Predicting Free Energy Contribution to the Conformational Stability of Folded Proteins From the Residue Sequence with Radial Basis Function Networks. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:81-88 [Conf]
  8. Piero Fariselli, Rita Casadio
    Prediction of the Number of Residue Contacts in Proteins. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:146-151 [Conf]
  9. Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
    BaCelLo: a balanced subcellular localization predictor. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:415-416 [Conf]
  10. Pier Luigi Martelli, Piero Fariselli, Rita Casadio
    An ENSEMBLE machine learning approach for the prediction of all-alpha membrane proteins. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2003, pp:205-211 [Conf]
  11. Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio
    A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:46-53 [Conf]
  12. Gianluca Pollastri, Pierre Baldi, Piero Fariselli, Rita Casadio
    Improved prediction of the number of residue contacts in proteins by recurrent neural networks. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:234-242 [Conf]
  13. Burkhard Rost, Rita Casadio, Piero Fariselli
    Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:192-200 [Conf]
  14. Piero Fariselli, Giacomo Finocchiaro, Rita Casadio
    Prediction of Signal Peptide in Proteins with Neural Networks. [Citation Graph (0, 0)][DBLP]
    WIRN, 2003, pp:237-244 [Conf]
  15. Piero Fariselli, Daniele Molinini, Rita Casadio, Anders Krogh
    Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models. [Citation Graph (0, 0)][DBLP]
    BIRD, 2007, pp:292-302 [Conf]
  16. Rita Casadio, Piero Fariselli, Pier Luigi Martelli
    In silico prediction of the structure of membrane proteins: Is it feasible? [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2003, v:4, n:4, pp:341-348 [Journal]
  17. Piero Fariselli, Ivan Rossi, Emidio Capriotti, Rita Casadio
    The WWWH of remote homolog detection: The state of the art. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2007, v:8, n:2, pp:78-87 [Journal]
  18. Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko, Piero Fariselli, Rita Casadio, Nir Ben-Tal
    ConSeq: the identification of functionally and structurally important residues in protein sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:8, pp:1322-1324 [Journal]
  19. Piero Fariselli, Rita Casadio
    Prediction of disulfide connectivity in proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:10, pp:957-964 [Journal]
  20. Piero Fariselli, Rita Casadio
    RCNPRED: prediction of the residue co-ordination numbers in proteins. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:1, pp:202-204 [Journal]
  21. Piero Fariselli, Rita Casadio
    HTP: a neural network-based method for predicting the topology of helical transmembrane domains in proteins. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:1, pp:41-48 [Journal]
  22. Piero Fariselli, Giacomo Finocchiaro, Rita Casadio
    SPEPlip: the detection of signal peptide and lipoprotein cleavage sites. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:18, pp:2498-2499 [Journal]
  23. Piero Fariselli, Michele Finelli, Davide Marchignoli, Pier Luigi Martelli, Ivan Rossi, Rita Casadio
    MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:4, pp:500-505 [Journal]
  24. Francesco Vivarelli, G. Giusti, M. Villani, Renato Campanini, Piero Fariselli, Mario Compiani, Rita Casadio
    LGANN: a parallel system combining a local genetic algorithm and neural networks for the prediction of secondary structure of proteins. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:3, pp:253-260 [Journal]
  25. Emidio Capriotti, Remo Calabrese, Rita Casadio
    Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:22, pp:2729-2734 [Journal]
  26. Emidio Capriotti, Rita Casadio
    K-Fold: a tool for the prediction of the protein folding kinetic order and rate. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:3, pp:385-386 [Journal]
  27. Emidio Capriotti, Piero Fariselli, Rita Casadio
    I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:306-310 [Journal]
  28. Piero Fariselli, Michele Finelli, Ivan Rossi, Mauro Amico, Andrea Zauli, Pier Luigi Martelli, Rita Casadio
    TRAMPLE: the transmembrane protein labelling environment. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:198-201 [Journal]
  29. Mauro Amico, Michele Finelli, Ivan Rossi, Andrea Zauli, Arne Elofsson, Håkan Viklund, Gunnar von Heijne, David Jones, Anders Krogh, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
    PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:169-172 [Journal]
  30. Andrea Pierleoni, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
    eSLDB: eukaryotic subcellular localization database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:208-212 [Journal]
  31. Francesco Vivarelli, Piero Fariselli, Rita Casadio
    The Prediction of Protein Secondary Structure with a Cascade Correlation Learning Architecture of Neural Networks. [Citation Graph (0, 0)][DBLP]
    Neural Computing and Applications, 1997, v:6, n:1, pp:57-62 [Journal]
  32. Rita Casadio
    Guest Editor's Introduction to the Special Issue on Computational Biology and Bioinformatics -- Part 1. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:4, pp:321-322 [Journal]
  33. Maria Mirto, Ivan Rossi, Italo Epicoco, Sandro Fiore, Piero Fariselli, Rita Casadio, Giovanni Aloisio
    High Throughput Protein Similarity Searches in the LIBI Grid Problem Solving Environment. [Citation Graph (0, 0)][DBLP]
    ISPA Workshops, 2007, pp:414-423 [Conf]
  34. Marco Vassura, Luciano Margara, Pietro di Lena, Filippo Medri, Piero Fariselli, Rita Casadio
    Fault Tolerance for Large Scale Protein 3D Reconstruction from Contact Maps. [Citation Graph (0, 0)][DBLP]
    WABI, 2007, pp:25-37 [Conf]
  35. Marco Vassura, Luciano Margara, Piero Fariselli, Rita Casadio
    A Graph Theoretic Approach to Protein Structure Selection. [Citation Graph (0, 0)][DBLP]
    WILF, 2007, pp:497-504 [Conf]
  36. Marco Vassura, Luciano Margara, Filippo Medri, Pietro di Lena, Piero Fariselli, Rita Casadio
    Reconstruction of 3D Structures from Protein Contact Maps. [Citation Graph (0, 0)][DBLP]
    ISBRA, 2007, pp:578-589 [Conf]
  37. Rita Casadio
    Guest Editor's Introduction to the Special Section on Computational Biology and Bioinformatics (WABI) - Part 2. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2007, v:4, n:1, pp:3- [Journal]

  38. Prediction of Protein-Protein Interacting Sites: How to Bridge Molecular Events to Large Scale Protein Interaction Networks. [Citation Graph (, )][DBLP]


  39. Predicting protein thermostability changes from sequence upon multiple mutations. [Citation Graph (, )][DBLP]


  40. High Throughput Comparison of Prokaryotic Genomes. [Citation Graph (, )][DBLP]


  41. On the Upper Bound of the Prediction Accuracy of Residue Contacts in Proteins with Correlated Mutations: The Case Study of the Similarity Matrices. [Citation Graph (, )][DBLP]


  42. A New Protein Representation Based on Fragment Contacts: Towards an Improvement of Contact Maps Predictions. [Citation Graph (, )][DBLP]


  43. Improving Coiled-Coil Prediction with Evolutionary Information. [Citation Graph (, )][DBLP]


  44. A graph theoretic approach to protein structure selection. [Citation Graph (, )][DBLP]


  45. Progress and challenges in predicting protein-protein interaction sites. [Citation Graph (, )][DBLP]


  46. FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. [Citation Graph (, )][DBLP]


  47. CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information. [Citation Graph (, )][DBLP]


  48. PredGPI: a GPI-anchor predictor. [Citation Graph (, )][DBLP]


  49. A computational approach for detecting peptidases and their specific inhibitors at the genome level. [Citation Graph (, )][DBLP]


  50. Bioinformatics in Italy: BITS2006, the third annual meeting of the Italian Society of Bioinformatics. [Citation Graph (, )][DBLP]


  51. A three-state prediction of single point mutations on protein stability changes. [Citation Graph (, )][DBLP]


  52. Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society. [Citation Graph (, )][DBLP]


  53. Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. [Citation Graph (, )][DBLP]


  54. A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins. [Citation Graph (, )][DBLP]


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