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Gary D. Stormo: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Fugen Li, Gary D. Stormo
    Selecting Optimum DNA Oligos for Microarrays. [Citation Graph (0, 0)][DBLP]
    BIBE, 2000, pp:200-207 [Conf]
  2. Samuel Levy, Gary D. Stormo
    DNA Sequence Classification Using DAWGs. [Citation Graph (0, 0)][DBLP]
    Structures in Logic and Computer Science, 1997, pp:339-352 [Conf]
  3. Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
    An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:519-520 [Conf]
  4. Gary D. Stormo
    Specificity of Protein-DNA Interactions. [Citation Graph (0, 0)][DBLP]
    Gene Regulations and Metabolism, 2002, pp:87-101 [Conf]
  5. Viatcheslav R. Akmaev, Scott T. Kelley, Gary D. Stormo
    A Phylogenetic Approach to RNA Structure Prediction. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:10-17 [Conf]
  6. Robert B. Cary, Gary D. Stormo
    Graph-Theoretic Approach to RNA Modeling Using Comparative Data. [Citation Graph (0, 0)][DBLP]
    ISMB, 1995, pp:75-80 [Conf]
  7. John M. Heumann, Alan S. Lapedes, Gary D. Stormo
    Neural Networks for Determining Protein Specificity and Multiple Alignment of Binding Sites. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:188-194 [Conf]
  8. Jan Gorodkin, Laurie J. Heyer, Gary D. Stormo
    Finding Common Sequence and Structure Motifs in a Set of RNA Sequences. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:120-123 [Conf]
  9. Gary D. Stormo, David Haussler
    Optimally Parsing a Sequence into Different Classes Based on Multiple Types of Evidence. [Citation Graph (0, 0)][DBLP]
    ISMB, 1994, pp:369-375 [Conf]
  10. Jack E. Tabaska, Gary D. Stormo
    Automated Alignment of RNA Sequences to Pseudoknotted Structures. [Citation Graph (0, 0)][DBLP]
    ISMB, 1997, pp:311-318 [Conf]
  11. Panayiotis V. Benos, Alan S. Lapedes, D. S. Fields, Gary D. Stormo
    SAMIE: Statistical Algorithm for Modeling Interaction Energies. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:115-126 [Conf]
  12. D. Guhathakurta, L. A. Schriefer, M. C. Hresko, R. H. Waterston, Gary D. Stormo
    Identifying Muscle Regulatory Elements and Genes in the Nematode Caenorhabditis Elegans. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:425-436 [Conf]
  13. D. C. Weaver, Christopher T. Workman, Gary D. Stormo
    Modeling Regulatory Networks with Weight Matrices. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 1999, pp:112-123 [Conf]
  14. Richard Souvenir, Jeremy Buhler, Gary D. Stormo, Weixiong Zhang
    Selecting Degenerate Multiplex PCR Primers. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:512-526 [Conf]
  15. Ritesh Agrawal, Gary D. Stormo
    Using mRNAs lengths to accurately predict the alternatively spliced gene products in Caenorhabditis elegans. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:10, pp:1239-1244 [Journal]
  16. Viatcheslav R. Akmaev, Scott T. Kelley, Gary D. Stormo
    Phylogenetically enhanced statistical tools for RNA structure prediction. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:6, pp:501-512 [Journal]
  17. Mark Borodovsky, Eugene V. Koonin, Chris Burge, James W. Fickett, John Logsdon, Andrej Sali, Gary D. Stormo, Igor B. Zhulin
    The Third Georgia Tech-Emory International Conference on Bioinformatics: In Silico Biology; Bioinformatics After Human Genome (November 15-18, 2001, Atlanta, Georgia, USA). [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:10, pp:859-861 [Journal]
  18. Fugen Li, Gary D. Stormo
    Selection of optimal DNA oligos for gene expression arrays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:11, pp:1067-1076 [Journal]
  19. Q. K. Chen, G. Z. Hertz, Gary D. Stormo
    MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:5, pp:563-566 [Journal]
  20. Q. K. Chen, G. Z. Hertz, Gary D. Stormo
    PromFD 1.0: a computer program that predicts eukaryotic pol II promoters using strings and IMD matrices. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:1, pp:29-35 [Journal]
  21. Jan Gorodkin, Laurie J. Heyer, Søren Brunak, Gary D. Stormo
    Displaying the information contents of structural RNA alignments: the structure logos. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1997, v:13, n:6, pp:583-586 [Journal]
  22. Jakob Hull Havgaard, Rune B. Lyngsø, Gary D. Stormo, Jan Gorodkin
    Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:9, pp:1815-1824 [Journal]
  23. G. Z. Hertz, G. W. Hartzell III, Gary D. Stormo
    Identification of consensus patterns in unaligned DNA sequences known to be functionally related. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1990, v:6, n:2, pp:81-92 [Journal]
  24. G. Z. Hertz, Gary D. Stormo
    Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1999, v:15, n:7, pp:563-577 [Journal]
  25. Yongmei Ji, Xing Xu, Gary D. Stormo
    A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:10, pp:1603-1611 [Journal]
  26. Jin Billy Li, Miao Zhang, Susan K. Dutcher, Gary D. Stormo
    Procom: a web-based tool to compare multiple eukaryotic proteomes. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:8, pp:1693-1694 [Journal]
  27. Samuel Levy, L. Compagnoni, Eugene W. Myers, Gary D. Stormo
    Xlandscape: the graphical display of word frequencies in sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:1, pp:74-80 [Journal]
  28. D. S. Prestridge, Gary D. Stormo
    SIGNAL SCAN 3.0: new database and program features. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1993, v:9, n:1, pp:113-115 [Journal]
  29. Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
    An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:1, pp:58-66 [Journal]
  30. Gary D. Stormo
    DNA binding sites: representation and discovery. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:1, pp:16-23 [Journal]
  31. Jack E. Tabaska, Robert B. Cary, Harold N. Gabow, Gary D. Stormo
    An RNA folding method capable of identifying pseudoknots and base triples. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:8, pp:691-699 [Journal]
  32. Debraj Guha Thakurta, Gary D. Stormo
    Identifying target sites for cooperatively binding factors. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:7, pp:608-621 [Journal]
  33. Ting Wang, Gary D. Stormo
    Combining phylogenetic data with co-regulated genes to identify regulatory motifs. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:18, pp:2369-2380 [Journal]
  34. Jiajian Liu, Gary D. Stormo
    Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:176- [Journal]
  35. Kenzie D. MacIsaac, Ting Wang, D. Benjamin Gordon, David K. Gifford, Gary D. Stormo, Ernest Fraenkel
    An improved map of conserved regulatory sites for Saccharomyces cerevisiae. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:113- [Journal]
  36. B. Clift, David Haussler, Ross M. McConnell, Thomas D. Schneider, Gary D. Stormo
    Sequence landscapes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1986, v:14, n:1, pp:141-158 [Journal]
  37. Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
    ILM: a web server for predicting RNA secondary structures with pseudoknots. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:146-149 [Journal]
  38. Thomas D. Schneider, Gary D. Stormo, M. A. Yarus, L. Gold
    Delila system tools. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1984, v:12, n:1, pp:129-140 [Journal]
  39. Christopher T. Workman, Yutong Yin, David L. Corcoran, Trey Ideker, Gary D. Stormo, Panayiotis V. Benos
    enoLOGOS: a versatile web tool for energy normalized sequence logos. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:389-392 [Journal]

  40. Detecting Coevolution of Functionally Related Proteins for Automated Protein Annotation. [Citation Graph (, )][DBLP]


  41. Session Introduction. [Citation Graph (, )][DBLP]


  42. A global approach to identify differentially expressed genes in cDNA (two-color) microarray experiments. [Citation Graph (, )][DBLP]


  43. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment. [Citation Graph (, )][DBLP]


  44. Context-dependent DNA recognition code for C2H2 zinc-finger transcription factors. [Citation Graph (, )][DBLP]


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