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Publications of Author

1. Mathieu Blanchette, Samson Kwong, Martin Tompa
   An Empirical Comparison of Tools for Phylogenetic Footprinting. [Citation Graph (0, 0)][DBLP]
   BIBE, 2003, pp:69-78 [Conf]
   
2. David Sankoff, Mathieu Blanchette
   The Median Problem for Breakpoints in Comparative Genomics. [Citation Graph (0, 0)][DBLP]
   COCOON, 1997, pp:251-264 [Conf]
   
3. Eric Blais, Mathieu Blanchette
   Common Substrings in Random Strings. [Citation Graph (0, 0)][DBLP]
   CPM, 2006, pp:129-140 [Conf]
   
4. Mathieu Blanchette
   Evolutionary Puzzles: An Introduction to Genome Rearrangement. [Citation Graph (0, 0)][DBLP]
   International Conference on Computational Science (2), 2001, pp:1003-1011 [Conf]
   
5. Gill Bejerano, David Haussler, Mathieu Blanchette
   Into the heart of darkness: large-scale clustering of human non-coding DNA. [Citation Graph (0, 0)][DBLP]
   ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:40-48 [Conf]
   
6. Mathieu Blanchette, Saurabh Sinha
   Separating real motifs from their artifacts. [Citation Graph (0, 0)][DBLP]
   ISMB (Supplement of Bioinformatics), 2001, pp:30-38 [Conf]
   
7. Mathieu Blanchette, Benno Schwikowski, Martin Tompa
   An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species. [Citation Graph (0, 0)][DBLP]
   ISMB, 2000, pp:37-45 [Conf]
   
8. Amol Prakash, Mathieu Blanchette, Saurabh Sinha, Martin Tompa
   Motif Discovery in Heterogeneous Sequence Data. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2004, pp:348-359 [Conf]
   
9. Mathieu Blanchette
   Algorithms for phylogenetic footprinting. [Citation Graph (0, 0)][DBLP]
   RECOMB, 2001, pp:49-58 [Conf]
   
10. Mathieu Blanchette
    A comparative analysis method for detecting binding sites in coding regions. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:57-66 [Conf]
    
11. Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk
    Inferring Gene Orders from Gene Maps Using the Breakpoint Distance. [Citation Graph (0, 0)][DBLP]
    Comparative Genomics, 2006, pp:99-112 [Conf]
    
12. Abdoulaye Baniré Diallo, Vladimir Makarenkov, Mathieu Blanchette
    Finding Maximum Likelihood Indel Scenarios. [Citation Graph (0, 0)][DBLP]
    Comparative Genomics, 2006, pp:171-185 [Conf]
    
13. Éric Gaul, Mathieu Blanchette
    Ordering Partially Assembled Genomes Using Gene Arrangements. [Citation Graph (0, 0)][DBLP]
    Comparative Genomics, 2006, pp:113-128 [Conf]
    
14. David Sankoff, Mathieu Blanchette
    Multiple genome rearrangements. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:243-247 [Conf]
    
15. David Sankoff, Mathieu Blanchette
    Probability models for genome rearrangement and linear invariants for phylogenetic inference. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:302-309 [Conf]
    
16. Anne Bergeron, Mathieu Blanchette, Annie Chateau, Cedric Chauve
    Reconstructing Ancestral Gene Orders Using Conserved Intervals. [Citation Graph (0, 0)][DBLP]
    WABI, 2004, pp:14-25 [Conf]
    
17. Saurabh Sinha, Mathieu Blanchette, Martin Tompa
    PhyME: A probabilistic algorithm for finding motifs in sets of orthologous sequences. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:170- [Journal]
    
18. Leonid Chindelevitch, Zhentao Li, Eric Blais, Mathieu Blanchette
    On the Inference of Parsimonious Indel Evolutionary Scenarios. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:3, pp:721-744 [Journal]
    
19. Mathieu Blanchette, Benno Schwikowski, Martin Tompa
    Algorithms for Phylogenetic Footprinting. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:2, pp:211-223 [Journal]
    
20. David Sankoff, Mathieu Blanchette
    Multiple Genome Rearrangement and Breakpoint Phylogeny. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:3, pp:555-570 [Journal]
    
21. David Sankoff, Mathieu Blanchette
    Phylogenetic Invariants for Genome Rearrangements. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:3/4, pp:- [Journal]
    
22. Mathieu Blanchette, Martin Tompa
    FootPrinter: a program designed for phylogenetic footprinting. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:13, pp:3840-3842 [Journal]
    
23. Fei Fang, Mathieu Blanchette
    FootPrinter3: phylogenetic footprinting in partially alignable sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Web-Server-Issue, pp:617-620 [Journal]
    
24. Vincent Ferretti, Christian Poitras, Dominique Bergeron, Benoit Coulombe, François Robert, Mathieu Blanchette
    PReMod: a database of genome-wide mammalian cis-regulatory module predictions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:122-126 [Journal]
    
25. 
    A Phylogenetic Approach to Genetic Map Refinement. [Citation Graph (, )][DBLP]
    
    
26. 
    An Evolutionary Study of the Human Papillomavirus Genomes. [Citation Graph (, )][DBLP]
    
    
27. 
    Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networks. [Citation Graph (, )][DBLP]
    
    
28. 
    Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss. [Citation Graph (, )][DBLP]
    
    
29. 
    Seeder: discriminative seeding DNA motif discovery. [Citation Graph (, )][DBLP]
    
    
30. 
    Ancestors 1.0: a web server for ancestral sequence reconstruction. [Citation Graph (, )][DBLP]
    
    
31. 
    Improving the prediction of mRNA extremities in the parasitic protozoan Leishmania. [Citation Graph (, )][DBLP]
    
    
32. 
    Prediction of tissue-specific cis-regulatory modules using Bayesian networks and regression trees. [Citation Graph (, )][DBLP]