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Publications of Author

1. Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Elena Gorshkova, Oleg N. Fokin, Mikhail P. Ponomarenko
   Mining Genome Variation to Associate Disease with Transcription Factor Binding Site Alteration. [Citation Graph (0, 0)][DBLP]
   BIBE, 2001, pp:153-160 [Conf]
   
2. Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Mikhail P. Ponomarenko
   Mining SNPs for Associating Disease Penetration with Transcription Factor Binding Site Alterations. [Citation Graph (0, 0)][DBLP]
   German Conference on Bioinformatics, 2001, pp:112-117 [Conf]
   
3. Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Y. V. Kondrakhin, Anatoly S. Frolov, F. A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer
   GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome. [Citation Graph (0, 0)][DBLP]
   ISMB, 1998, pp:95-104 [Conf]
   
4. Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, F. A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Y. V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton
   Integrated databases and computer systems for studying eukaryotic gene expression. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1999, v:15, n:7, pp:669-686 [Journal]
   
5. Julia V. Ponomarenko, Galina Orlova, Tatyana I. Merkulova, Gennady V. Vasiliev, Mikhail P. Ponomarenko
   Mining Genome Variation to Associate Genetic Disease with Mutation Alterations and Ortho/Paralogous Polimorphysms in Transcription Factor Binding Site. [Citation Graph (0, 0)][DBLP]
   International Journal on Artificial Intelligence Tools, 2005, v:14, n:4, pp:599-620 [Journal]
   
6. Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Mikhail P. Ponomarenko
   Mining DNA sequences to predict sites which mutations cause genetic diseases. [Citation Graph (0, 0)][DBLP]
   Knowl.-Based Syst., 2002, v:15, n:4, pp:225-233 [Journal]
   
7. Nikolay A. Kolchanov, Elena A. Ananko, Olga A. Podkolodnaya, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko
   Transcription Regulatory Regions Database (TRRD): its status in 1999. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 1999, v:27, n:1, pp:303-306 [Journal]
   
8. Nikolay A. Kolchanov, Elena V. Ignatieva, Elena A. Ananko, Olga A. Podkolodnaya, Irina L. Stepanenko, Tatyana I. Merkulova, Mikhail A. Pozdnyakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, Aida G. Romashchenko
   Transcription Regulatory Regions Database (TRRD): its status in 2002. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2002, v:30, n:1, pp:312-317 [Journal]
   
9. Nikolay A. Kolchanov, Olga A. Podkolodnaya, Elena A. Ananko, Elena V. Ignatieva, Irina L. Stepanenko, Olga V. Kel-Margoulis, Alexander E. Kel, Tatyana I. Merkulova, T. N. Goryachkovskaya, T. V. Busygina, F. A. Kolpakov, Nikolay L. Podkolodny, Andrey N. Naumochkin, I. M. Korostishevskaya, Aida G. Romashchenko, G. Christian Overton
   Transcription Regulatory Regions Database (TRRD): its status in 2000. [Citation Graph (0, 0)][DBLP]
   Nucleic Acids Research, 2000, v:28, n:1, pp:298-301 [Journal]
   
10. Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Anatoly S. Frolov, Vadim P. Valuev, Mikhail P. Ponomarenko
    rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:118-121 [Journal]
    
11. Julia V. Ponomarenko, Tatyana I. Merkulova, Gennady V. Vasiliev, Zoya B. Levashova, Galina Orlova, Sergey V. Lavryushev, Oleg N. Fokin, Mikhail P. Ponomarenko, Anatoly S. Frolov, Akinori Sarai
    rSNP_Guide, a database system for analysis of transcription factor binding to target sequences: application to SNPs and site-directed mutations. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:312-316 [Journal]
    
12. 
    Combined experimental and computational approaches to study the regulatory elements in eukaryotic genes. [Citation Graph (, )][DBLP]
    
    
13. 
    Recognition of interferon-inducible sites, promoters, and enhancers. [Citation Graph (, )][DBLP]
    
    
14. 
    Effective transcription factor binding site prediction using a combination of optimization, a genetic algorithm and discriminant analysis to capture distant interactions. [Citation Graph (, )][DBLP]