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Publications of Author

1. Usman Roshan, Dennis R. Livesay, David La
   Improved Phylogenetic Motif Detection Using Parsimony. [Citation Graph (0, 0)][DBLP]
   BIBE, 2005, pp:19-26 [Conf]
   
2. Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar
   Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees. [Citation Graph (0, 0)][DBLP]
   BIBE, 2006, pp:159-164 [Conf]
   
3. Usman Roshan, Bernard M. E. Moret, Tandy Warnow, Tiffani L. Williams
   Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees. [Citation Graph (0, 0)][DBLP]
   CSB, 2004, pp:98-109 [Conf]
   
4. Z. Du, Alexandros Stamatakis, F. Lin, Usman Roshan, Luay Nakhleh
   Parallel Divide-and-Conquer Phylogeny Reconstruction by Maximum Likelihood. [Citation Graph (0, 0)][DBLP]
   HPCC, 2005, pp:776-785 [Conf]
   
5. Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Crummey, Luay Nakhleh, Usman Roshan
   PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction. [Citation Graph (0, 0)][DBLP]
   ICPADS (2), 2005, pp:346-350 [Conf]
   
6. Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
   Designing fast converging phylogenetic methods. [Citation Graph (0, 0)][DBLP]
   ISMB (Supplement of Bioinformatics), 2001, pp:190-198 [Conf]
   
7. Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
   The Accuracy of Fast Phylogenetic Methods for Large Datasets. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2002, pp:211-222 [Conf]
   
8. Bernard M. E. Moret, Usman Roshan, Tandy Warnow
   Sequence-Length Requirements for Phylogenetic Methods. [Citation Graph (0, 0)][DBLP]
   WABI, 2002, pp:343-356 [Conf]
   
9. Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
   The Performance of Phylogenetic Methods on Trees of Bounded Diameter. [Citation Graph (0, 0)][DBLP]
   WABI, 2001, pp:214-226 [Conf]
   
10. Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy Warnow
    Estimating the Deviation from a Molecular Clock. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:287-299 [Conf]
    
11. David A. Bader, Usman Roshan, Alexandros Stamatakis
    Computational Grand Challenges in Assembling the Tree of Life: Problems and Solutions. [Citation Graph (0, 0)][DBLP]
    Advances in Computers, 2006, v:68, n:, pp:128-179 [Journal]
    
12. Inderjit S. Dhillon, Edward M. Marcotte, Usman Roshan
    Diametrical clustering for identifying anti-correlated gene clusters. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:13, pp:1612-1619 [Journal]
    
13. Usman Roshan, Dennis R. Livesay
    Probalign: multiple sequence alignment using partition function posterior probabilities. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:22, pp:2715-2721 [Journal]
    
14. 
    Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na⁺ symporter family. [Citation Graph (, )][DBLP]
    
    
15. 
    Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. [Citation Graph (, )][DBLP]