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Publications of Author

1. Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
   A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. [Citation Graph (0, 0)][DBLP]
   BIBE, 2003, pp:3-10 [Conf]
   
2. Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu
   Protein Threading by Linear Programming. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2003, pp:264-275 [Conf]
   
3. Sangjo Han, Byung-chul Lee, Seung Taek Yu, Chan-seok Jeong, Soyoung Lee, Dongsup Kim
   Fold recognition by combining profile-profile alignment and support vector machine. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:11, pp:2667-2673 [Journal]
   
4. Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu
   A computational pipeline for protein structure prediction and analysis at genome scale. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2003, v:19, n:15, pp:1985-1996 [Journal]
   
5. Sangjo Han, Dongsup Kim
   AtRTPrimer: database for Arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairs. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2006, v:7, n:, pp:179- [Journal]
   
6. Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu
   Raptor: Optimal Protein Threading by Linear Programming. [Citation Graph (0, 0)][DBLP]
   J. Bioinformatics and Computational Biology, 2003, v:1, n:1, pp:95-118 [Journal]
   
7. 
   Inference of Gene Regulatory Networks Using Time Sliding Comparison and Transcriptional Lagging Time from Time Series Gene Expression Profiles. [Citation Graph (, )][DBLP]
   
   
8. 
   Linear predictive coding representation of correlated mutation for protein sequence alignment. [Citation Graph (, )][DBLP]
   
   
9. 
   SIMPRO: simple protein homology detection method by using indirect signals. [Citation Graph (, )][DBLP]
   
   
10. 
    A new method for revealing correlated mutations under the structural and functional constraints in proteins. [Citation Graph (, )][DBLP]
    
    
11. 
    Predicting and improving the protein sequence alignment quality by support vector regression. [Citation Graph (, )][DBLP]
    
    
12. 
    Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection. [Citation Graph (, )][DBLP]
    
    
13. 
    Linear predictive coding representation of correlated mutation for protein sequence alignment. [Citation Graph (, )][DBLP]
    
    
14. 
    PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship. [Citation Graph (, )][DBLP]