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James R. Cole: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Qiang Xue, James R. Cole, Sakti Pramanik
    Sequence Homology Search Based on Database Indexing Using the Profile Hidden Markov Model. [Citation Graph (0, 0)][DBLP]
    BIBE, 2006, pp:135-140 [Conf]
  2. Jin Kim, James R. Cole, Eric Torng, Sakti Pramanik
    Inferring Relatedness of a Macromolecule to a Sequence Database Without Sequencing. [Citation Graph (0, 0)][DBLP]
    ISMB, 1996, pp:125-133 [Conf]
  3. Timothy G. Lilburn, Scott H. Harrison, James R. Cole, George M. Garrity
    Computational aspects of systematic biology. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2006, v:7, n:2, pp:186-195 [Journal]
  4. Jin Kim, James R. Cole, Sakti Pramanik
    Alignment of possible secondary structures in multiple RNA sequences using simulated annealing. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1996, v:12, n:4, pp:259-267 [Journal]
  5. James R. Cole, B. Chai, Terry L. Marsh, Ryan J. Farris, Q. Wang, S. A. Kulam, S. Chandra, D. M. McGarrell, Thomas M. Schmidt, George M. Garrity, James M. Tiedje
    The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:442-443 [Journal]
  6. Joel A. Klappenbach, Paul Saxman, James R. Cole, Thomas M. Schmidt
    rrndb: the Ribosomal RNA Operon Copy Number Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:181-184 [Journal]
  7. Bonnie L. Maidak, James R. Cole, Timothy G. Lilburn, Charles T. Parker Jr., Paul Saxman, Ryan J. Farris, George M. Garrity, Gary J. Olsen, Thomas M. Schmidt, James M. Tiedje
    The RDP-II (Ribosomal Database Project). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2001, v:29, n:1, pp:173-174 [Journal]
  8. Bonnie L. Maidak, James R. Cole, Timothy G. Lilburn, Charles T. Parker Jr., Paul Saxman, Jason M. Stredwick, George M. Garrity, Bing Li, Gary J. Olsen, Sakti Pramanik, Thomas M. Schmidt, James M. Tiedje
    The RDP (Ribosomal Database Project) continues. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:173-174 [Journal]
  9. Bonnie L. Maidak, James R. Cole, Charles T. Parker Jr., George M. Garrity, Niels Larsen, Bing Li, Timothy G. Lilburn, Michael J. McCaughey, Gary J. Olsen, Ross A. Overbeek, Sakti Pramanik, Thomas M. Schmidt, James M. Tiedje, Carl R. Woese
    A new version of the RDP (Ribosomal Database Project). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:171-173 [Journal]
  10. John W. Urbance, James R. Cole, Paul Saxman, James M. Tiedje
    BSD: the Biodegradative Strain Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2003, v:31, n:1, pp:152-155 [Journal]
  11. James R. Cole, B. Chai, Ryan J. Farris, Q. Wang, S. A. Kulam, D. M. McGarrell, George M. Garrity, James M. Tiedje
    The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Database-Issue, pp:294-296 [Journal]
  12. James R. Cole, B. Chai, Ryan J. Farris, Q. Wang, A. S. Kulam-Syed-Mohideen, D. M. McGarrell, A. M. Bandela, E. Cardenas, George M. Garrity, James M. Tiedje
    The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:169-172 [Journal]

  13. BLAST Tree: Fast Filtering for Genomic Sequence Classification. [Citation Graph (, )][DBLP]


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