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José María Carazo: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Sjors H. W. Scheres, A. J. Merino, Carlos Oscar Sánchez Sorzano, José María Carazo
    Grid Computing in 3D-EM Image Processing Using Xmipp. [Citation Graph (0, 0)][DBLP]
    CBMS, 2005, pp:561-563 [Conf]
  2. Pedro A. de Alarcón, Alberto D. Pascual-Montano, José María Carazo
    Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases. [Citation Graph (0, 0)][DBLP]
    CIVR, 2002, pp:225-234 [Conf]
  3. Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta
    A Semantic Mediation Approach for Problems in Computational Molecular Biology. [Citation Graph (0, 0)][DBLP]
    CSB, 2003, pp:386-387 [Conf]
  4. Alberto D. Pascual-Montano, Francisco Tirado, Pedro Carmona-Saez, José María Carazo, Roberto D. Pascual-Marqui
    Two-way clustering of gene expression profiles by sparse matrix factorization. [Citation Graph (0, 0)][DBLP]
    CSB Workshops, 2005, pp:103-104 [Conf]
  5. Javier A. Velázquez-Muriel, José María Carazo
    Extending the incorporation of superfamily structural information in the process of flexible fitting in 3D-EM. [Citation Graph (0, 0)][DBLP]
    CSB Workshops, 2005, pp:209-210 [Conf]
  6. José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García
    Grid Computing in Structure Determination of Biological Specimens by Electron Microscope Tomography. [Citation Graph (0, 0)][DBLP]
    European Across Grids Conference, 2003, pp:171-181 [Conf]
  7. Sjors H. W. Scheres, Mikel Valle, José María Carazo
    Fast maximum-likelihood refinement of electron microscopy images. [Citation Graph (0, 0)][DBLP]
    ECCB/JBI, 2005, pp:244- [Conf]
  8. Ignacio Arganda-Carreras, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic
    Consistent and Elastic Registration of Histological Sections Using Vector-Spline Regularization. [Citation Graph (0, 0)][DBLP]
    CVAMIA, 2006, pp:85-95 [Conf]
  9. S. Lindek, R. Fritsch, Ernst H. K. Stelzer, José María Carazo, A. Engel, I. Fita, C. Henn, P. McNeil, David M. Shotton, J. Machtynger
    Biolmage, the database of biological microscopy data. [Citation Graph (0, 0)][DBLP]
    German Conference on Bioinformatics, 1998, pp:- [Conf]
  10. Oswaldo Trelles-Salazar, Emilio L. Zapata, José María Carazo
    Mapping Strategies for Sequential Sequence Comparison Algorithms on LAN-Based Message Passing Architectures. [Citation Graph (0, 0)][DBLP]
    HPCN, 1994, pp:197-202 [Conf]
  11. Jose-Roman Bilbao-Castro, José María Carazo, Inmaculada García, José-Jesús Fernández
    Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy. [Citation Graph (0, 0)][DBLP]
    ICIP (1), 2003, pp:565-568 [Conf]
  12. Pedro A. de Alarcón, Alberto D. Pascual-Montano, Amarnath Gupta, José María Carazo
    Modeling Shape and Topology of 3D Images of Biological Specimens. [Citation Graph (0, 0)][DBLP]
    ICPR (1), 2002, pp:79-82 [Conf]
  13. Bartosz Telenczuk, María J. Ledesma-Carbayo, Javier A. Velázquez-Muriel, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos
    Molecular image registration using mutual information and differential evolution optimization. [Citation Graph (0, 0)][DBLP]
    ISBI, 2006, pp:844-847 [Conf]
  14. Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo
    Volumetric constraints in 3D tomography applied to electron microscopy. [Citation Graph (0, 0)][DBLP]
    ISBI, 2002, pp:641-644 [Conf]
  15. Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo, José-Jesús Fernández, Samuel Matej
    3D reconstruction of 2D crystals from projections in real space. [Citation Graph (0, 0)][DBLP]
    ISBI, 2002, pp:689-692 [Conf]
  16. Joaquín Dopazo, Huaichun Wang, José María Carazo
    A New Type of Unsupervised Growing Neural Network for Biological Sequence Classification That Adopts the Topology of a Phylogenetic Tree. [Citation Graph (0, 0)][DBLP]
    IWANN, 1997, pp:932-941 [Conf]
  17. Juan J. Merelo Guervós, Alberto Prieto, Federico Morán, Roberto Marabini, José María Carazo
    A GA-optimized Neural Network for Classification of Biological Particles from Electron-Microscopy Images. [Citation Graph (0, 0)][DBLP]
    IWANN, 1997, pp:1174-1182 [Conf]
  18. Juan J. Merelo Guervós, Víctor Manuel Rivas Santos, Gustavo Romero, Pedro A. Castillo Valdivieso, Alberto Pascual, José María Carazo
    Improved Automatic Classification of Biological Particles from Electron-Microscopy Images Using Genetic Neural Nets. [Citation Graph (0, 0)][DBLP]
    IWANN (2), 1999, pp:373-382 [Conf]
  19. Alberto Pascual, Montserrat Barcéna, Juan J. Merelo Guervós, José María Carazo
    Application of the Fuzzy Kohonen Clustering Network to Biological Macromolecules Images Classification. [Citation Graph (0, 0)][DBLP]
    IWANN (2), 1999, pp:331-340 [Conf]
  20. Jose-Roman Bilbao-Castro, José María Carazo, José-Jesús Fernández, Inmaculada García
    Parallelization and Comparison of 3D Iterative Reconstruction Algorithms. [Citation Graph (0, 0)][DBLP]
    PDP, 2004, pp:96-102 [Conf]
  21. José-Jesús Fernández, Albert F. Lawrence, Javier Roca, Inmaculada García, Mark H. Ellisman, José María Carazo
    High Performance Computing in Electron Microscope Tomography of Complex Biological Structures. [Citation Graph (0, 0)][DBLP]
    VECPAR, 2002, pp:166-180 [Conf]
  22. Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, José María Carazo, Amarnath Gupta
    Designing and executing scientific workflows with a programmable integrator. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:13, pp:2092-2100 [Journal]
  23. Jorge García de la Nava, Daniel Franco Santaella, Jesús Cuenca Alba, José María Carazo, Oswaldo Trelles, Alberto D. Pascual-Montano
    Engene: the processing and exploratory analysis of gene expression data. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:5, pp:657-658 [Journal]
  24. Oswaldo Trelles-Salazar, Emilio L. Zapata, José María Carazo
    On an efficient parallelization of exhaustive sequence comparison algorithms on message passing architectures. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1994, v:10, n:5, pp:509-511 [Journal]
  25. Oswaldo Trelles-Salazar, Emilio L. Zapata, Joaquín Dopazo, A. F. Coulson, José María Carazo
    An image-processing approach to dotplots: an X-Window-based program for interactive analysis of dotplots derived from sequence and structural data. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1995, v:11, n:3, pp:301-308 [Journal]
  26. Oswaldo Trelles, Miguel A. Andrade, Alfonso Valencia, Emilio L. Zapata, José María Carazo
    Computational space reduction and parallelization of a new clustering approach for large groups of sequences. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:5, pp:439-451 [Journal]
  27. Oswaldo Trelles, C. Ceron, Huaichun Wang, Joaquín Dopazo, José María Carazo
    New phylogenetic venues opened by a novel implementation of the DNAml algorithm. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:6, pp:544-545 [Journal]
  28. Huaichun Wang, Joaquín Dopazo, José María Carazo
    Self-organizing tree growing network for classifying amino acids. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 1998, v:14, n:4, pp:376-377 [Journal]
  29. Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano
    Biclustering of gene expression data by non-smooth non-negative matrix factorization. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:78- [Journal]
  30. Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano
    Integrated analysis of gene expression by association rules discovery. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:54- [Journal]
  31. Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano
    Discovering semantic features in the literature: a foundation for building functional associations. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:41- [Journal]
  32. José-Jesús Fernández, Inmaculada García, José María Carazo, Roberto Marabini
    Electron tomography of complex biological specimens on the Grid. [Citation Graph (0, 0)][DBLP]
    Future Generation Comp. Syst., 2007, v:23, n:3, pp:435-446 [Journal]
  33. Andrés Rodríguez, José María Carazo, Oswaldo Trelles-Salazar
    Mining association rules from biological databases. [Citation Graph (0, 0)][DBLP]
    JASIST, 2005, v:56, n:5, pp:493-504 [Journal]
  34. José-Jesús Fernández, José María Carazo, Inmaculada García
    Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2004, v:64, n:2, pp:285-300 [Journal]
  35. José María Carazo, Ernst H. K. Stelzer, A. Engel, I. Fita, C. Henn, J. Machtynger, P. McNeil, David M. Shotton, Monica Chagoyen, Pedro A. de Alarcón, R. Fritsch, J. B. Heymann, S. Kalko, J. J. Pittet, Patricia Rodriguez-Tomé, Thomas Boudier
    Organising multi-dimensional biological image information: the BioImage Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:280-283 [Journal]
  36. José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García
    Biological Structure Determination by EM is Well Suited to Grid Computing. [Citation Graph (0, 0)][DBLP]
    New Generation Comput., 2004, v:22, n:2, pp:- [Journal]
  37. Juan J. Merelo Guervós, Alberto Prieto, Federico Morán, Roberto Marabini, José María Carazo
    Automatic Classification of Biological Particles from Electron-microscopy Images Using Conventional and Genetic-algorithm Optimized Learning Vector Quantization. [Citation Graph (0, 0)][DBLP]
    Neural Processing Letters, 1998, v:8, n:1, pp:55-65 [Journal]
  38. Alberto D. Pascual-Montano, José María Carazo, Kieko Kochi, Dietrich Lehmann, Roberto D. Pascual-Marqui
    Nonsmooth Nonnegative Matrix Factorization (nsNMF). [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Pattern Anal. Mach. Intell., 2006, v:28, n:3, pp:403-415 [Journal]
  39. C. Ceron, Joaquín Dopazo, Emilio L. Zapata, José María Carazo, Oswaldo Trelles
    Parallel Implementation of DNAml Program on Message-Passing Architectures. [Citation Graph (0, 0)][DBLP]
    Parallel Computing, 1998, v:24, n:5-6, pp:701-716 [Journal]
  40. Jose-Roman Bilbao-Castro, A. Merino, Inmaculada García, José María Carazo, José-Jesús Fernández
    Parameter optimization in 3D reconstruction on a large scale grid. [Citation Graph (0, 0)][DBLP]
    Parallel Computing, 2007, v:33, n:4-5, pp:250-263 [Journal]
  41. Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García, José-Jesús Fernández
    The Potential Of Grid Computing In Three-Dimensional Electron Microscopy. [Citation Graph (0, 0)][DBLP]
    Parallel Processing Letters, 2004, v:14, n:2, pp:151-162 [Journal]
  42. Roberto D. Pascual-Marqui, Alberto D. Pascual-Montano, Kieko Kochi, José María Carazo
    Smoothly distributed fuzzy c-means: a new self-organizing map. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition, 2001, v:34, n:12, pp:2395-2402 [Journal]
  43. Carlos Oscar Sánchez Sorzano, Roberto Marabini, Gabor T. Herman, José María Carazo
    Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstruction. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition, 2005, v:38, n:12, pp:2587-2601 [Journal]
  44. Roberto Marabini, José María Carazo
    On a new computationally fast image invariant based on bispectral projections. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition Letters, 1996, v:17, n:9, pp:959-967 [Journal]
  45. Francisco F. Rivera, Emilio L. Zapata, José María Carazo
    Cluster validity based on the hard tendency of the fuzzy classification. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition Letters, 1990, v:11, n:1, pp:7-12 [Journal]
  46. Carlos Oscar Sánchez Sorzano, José María Carazo, Oswaldo Trelles
    Command-line interfaces can be efficiently brought to graphics: COLIMATE (the COmmand LIne MATE). [Citation Graph (0, 0)][DBLP]
    Softw., Pract. Exper., 2002, v:32, n:9, pp:873-887 [Journal]
  47. Roberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman
    3-D reconstruction of 2-D crystals in real space. [Citation Graph (0, 0)][DBLP]
    IEEE Transactions on Image Processing, 2004, v:13, n:4, pp:549-561 [Journal]
  48. Carlos Oscar Sánchez Sorzano, Javier A. Velázquez-Muriel, Roberto Marabini, Gabor T. Herman, José María Carazo
    Volumetric restrictions in single particle 3DEM reconstruction. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition, 2008, v:41, n:2, pp:616-626 [Journal]

  49. Flexible image registration for the identification of best fitted protein models in 3D-EM maps. [Citation Graph (, )][DBLP]


  50. ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. [Citation Graph (, )][DBLP]


  51. aGEM: an integrative system for analyzing spatial-temporal gene-expression information. [Citation Graph (, )][DBLP]


  52. Assessment of protein set coherence using functional annotations. [Citation Graph (, )][DBLP]


  53. Marker-free image registration of electron tomography tilt-series. [Citation Graph (, )][DBLP]


  54. bioNMF: a versatile tool for non-negative matrix factorization in biology. [Citation Graph (, )][DBLP]


  55. A literature-based similarity metric for biological processes. [Citation Graph (, )][DBLP]


  56. Moara: a Java library for extracting and normalizing gene and protein mentions. [Citation Graph (, )][DBLP]


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