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Publications of Author

1. Piotr Cieplak, Peter A. Kollman
   Peptide mimetics as enzyme inhibitors: Use of free energy perturbation calculations to evaluate isosteric replacement for amide bonds in a potent HIV protease inhibitor. [Citation Graph (0, 0)][DBLP]
   Journal of Computer-Aided Molecular Design, 1993, v:7, n:3, pp:291-304 [Journal]
   
2. Adam Jarmula, Piotr Cieplak, Andrzej Les, Wojciech Rode
   Relative free energies of binding to thymidylate synthase of 2- and/or 4-thio and/or 5-fluoro analogues of dUMP. [Citation Graph (0, 0)][DBLP]
   Journal of Computer-Aided Molecular Design, 2003, v:17, n:10, pp:699-710 [Journal]
   
3. Piotr Cieplak, Wendy D. Cornell, Christopher I. Bayly, Peter A. Kollman
   Application of the Multimolecule and Multiconformational RESP Methodology to Biopolymers: Charge Derication for DNA, RNA, and Proteins. [Citation Graph (0, 0)][DBLP]
   Journal of Computational Chemistry, 1995, v:16, n:11, pp:1357-1376 [Journal]
   
4. Piotr Cieplak, James W. Caldwell, Peter A. Kollman
   Molecular mechanical models for organic and biological systems going beyond the atom centered two body additive approximation: aqueous solution free energies of methanol and N-methyl acetamide, nucleic acid base, and amide hydrogen bonding and chloroform/ [Citation Graph (0, 0)][DBLP]
   Journal of Computational Chemistry, 2001, v:22, n:10, pp:1048-1057 [Journal]
   
5. Yong Duan, Chun Wu, Shibasish Chowdhury, Mathew C. Lee, Guoming Xiong, Wei Zhang, Rong Yang, Piotr Cieplak, Ray Luo, Taisung Lee, James W. Caldwell, Junmei Wang, Peter A. Kollman
   A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. [Citation Graph (0, 0)][DBLP]
   Journal of Computational Chemistry, 2003, v:24, n:16, pp:1999-2012 [Journal]
   
6. Allison E. Howard, Piotr Cieplak, Peter A. Kollman
   A Molecular Mechanical Model That Reproduces the Relative Energies for Chair and Twist-Boat Conformations of 1, 3-Dioxanes. [Citation Graph (0, 0)][DBLP]
   Journal of Computational Chemistry, 1995, v:16, n:2, pp:243-262 [Journal]
   
7. Marek Orzechowski, Piotr Cieplak, Lucjan Piela
   Theoretical calculation of the coiled-coil stability in water in the context of its possible use as a molecular rack. [Citation Graph (0, 0)][DBLP]
   Journal of Computational Chemistry, 2002, v:23, n:1, pp:106-110 [Journal]
   
8. Junmei Wang, Piotr Cieplak, Peter A. Kollman
   How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? [Citation Graph (0, 0)][DBLP]
   Journal of Computational Chemistry, 2000, v:21, n:12, pp:1049-1074 [Journal]
   
9. Zhi-Xiang Wang, Wei Zhang, Chun Wu, Hongxing Lei, Piotr Cieplak, Yong Duan
   Strike a balance: Optimization of backbone torsion parameters of AMBER polarizable force field for simulations of proteins and peptides. [Citation Graph (0, 0)][DBLP]
   Journal of Computational Chemistry, 2006, v:27, n:6, pp:781-790 [Journal]
   
10. Zhi-Xiang Wang, Wei Zhang, Chun Wu, Hongxing Lei, Piotr Cieplak, Yong Duan
    Erratum - Strike a balance: Optimization of backbone torsion parameters of AMBER polarizable force field for simulations of proteins and peptides. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2006, v:27, n:8, pp:994- [Journal]