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Journals in DBLP

Journal of Chemical Information and Modeling
2006, volume: 46, number: 3

  1. William L. Jorgensen
    QSAR/QSPR and Proprietary Data. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:937- [Journal]
  2. Sangtae Kim
    Cyberinfrastructure: Enabling the Chemical Sciences. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:938- [Journal]
  3. Kieron R. Taylor, Robert J. Gledhill, Jonathan W. Essex, Jeremy G. Frey, Stephen W. Harris, David De Roure
    Bringing Chemical Data onto the Semantic Web. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:939-952 [Journal]
  4. Sulev Sild, Uko Maran, Andre Lomaka, Mati Karelson
    Open Computing Grid for Molecular Science and Engineering. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:953-959 [Journal]
  5. Robert J. Gledhill, Sarah Kent, Brian Hudson, W. Graham Richards, Jonathan W. Essex, Jeremy G. Frey
    A Computer-Aided Drug Discovery System for Chemistry Teaching. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:960-970 [Journal]
  6. Thanh N. Truong, Manohar Nayak, Hung H. Huynh, Tom Cook, Priya Mahajan, LeThuy T. Tran, Jannu Bharath, Shrish Jain, Ha B. Pham, Chaiwoot Boonyasiriwat, Nhat Nguyen, Evan Andersen, Yong Kim, Suengkeol Choe, Jihoon Choi, Thomas E. Cheatham III, Julio C. Facelli
    Computational Science and Engineering Online (CSE-Online): A Cyber-Infrastructure for Scientific Computing. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:971-984 [Journal]
  7. Henry S. Rzepa, Andrew Wheat, Mark J. Williamson
    ChemSem: An Extensible and Scalable RSS-Based Seminar Alerting System for Scientific Collaboration. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:985-990 [Journal]
  8. Rajarshi Guha, Michael T. Howard, Geoffrey R. Hutchison, Peter Murray-Rust, Henry S. Rzepa, Christoph Steinbeck, Jörg K. Wegner, Egon L. Willighagen
    The Blue Obelisk-Interoperability in Chemical Informatics. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:991-998 [Journal]
  9. Scott P. Brown, Steven W. Muchmore
    High-Throughput Calculation of Protein-Ligand Binding Affinities: Modification and Adaptation of the MM-PBSA Protocol to Enterprise Grid Computing. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:999-1005 [Journal]
  10. Simon J. Coles, Jeremy G. Frey, Michael B. Hursthouse, Mark E. Light, Andrew J. Milsted, Leslie Carr, David De Roure, Christopher Gutteridge, Hugo R. Mills, Ken Meacham, Mike Surridge, Elizabeth Lyon, Rachel Heery, Monica Duke, Michael Day
    An E-Science Environment for Service Crystallography-from Submission to Dissemination. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1006-1016 [Journal]
  11. Randall Bramley, Kenneth Chiu, Tharaka Devadithya, Nisha Gupta, Charles A. Hart, John C. Huffman, Kianosh Huffman, Yu Ma, Donald F. McMullen
    Instrument Monitoring, Data Sharing, and Archiving Using Common Instrument Middleware Architecture (CIMA). [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1017-1025 [Journal]
  12. Matt J. Harvey, D. Scott, Peter V. Coveney
    An Integrated Instrument Control and Informatics System for Combinatorial Materials Research. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1026-1033 [Journal]
  13. Peter Lind, Markus Alm
    A Database-Centric Virtual Chemistry System. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1034-1039 [Journal]
  14. Michael Thormann, Andreas Klamt, Martin Hornig, Michael Almstetter
    COSMOsim: Bioisosteric Similarity Based on COSMO-RS sigma Profiles. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1040-1053 [Journal]
  15. Fumiyoshi Yamashita, Takayuki Itoh, Hideto Hara, Mitsuru Hashida
    Visualization of Large-Scale Aqueous Solubility Data Using a Novel Hierarchical Data Visualization Technique. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1054-1059 [Journal]
  16. Bradley C. Pearce, Michael J. Sofia, Andrew C. Good, Dieter M. Drexler, David A. Stock
    An Empirical Process for the Design of High-Throughput Screening Deck Filters. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1060-1068 [Journal]
  17. Ramaswamy Nilakantan, David S. Nunn, Lynne Greenblatt, Gary Walker, Kevin S. Haraki, Dominick Mobilio
    A Family of Ring System-Based Structural Fragments for Use in Structure-Activity Studies: Database Mining and Recursive Partitioning. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1069-1077 [Journal]
  18. Alireza Givehchi, Andreas Bender, Robert C. Glen
    Analysis of Activity Space by Fragment Fingerprints, 2D Descriptors, and Multitarget Dependent Transformation of 2D Descriptors. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1078-1083 [Journal]
  19. Surjit B. Dixit, Sergei Y. Ponomarev, David L. Beveridge
    Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectories on DNA. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1084-1093 [Journal]
  20. Jeffrey W. Godden, Jürgen Bajorath
    A Distance Function for Retrieval of Active Molecules from Complex Chemical Space Representations. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1094-1097 [Journal]
  21. Dariusz Plewczynski, Stéphane A. H. Spieser, Uwe Koch
    Assessing Different Classification Methods for Virtual Screening. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1098-1106 [Journal]
  22. Alex M. Clark, Paul Labute, Martin Santavy
    2D Structure Depiction. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1107-1123 [Journal]
  23. Nidhi, Meir Glick, John W. Davies, Jeremy L. Jenkins
    Prediction of Biological Targets for Compounds Using Multiple-Category Bayesian Models Trained on Chemogenomics Databases. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1124-1133 [Journal]
  24. Nikolay P. Todorov, Philippe H. Monthoux, Ian L. Alberts
    The Influence of Variations of Ligand Protonation and Tautomerism on Protein-Ligand Recognition and Binding Energy Landscape. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1134-1142 [Journal]
  25. Mohammad Wasim, Richard G. Brereton
    Hard Modeling Methods for the Curve Resolution of Data from Liquid Chromatography with a Diode Array Detector and On-Flow Liquid Chromatography with Nuclear Magnetic Resonance Spectroscopy. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1143-1153 [Journal]
  26. Anton Lindström, Fredrik Pettersson, Fredrik Almqvist, Anders Berglund, Jan Kihlberg, Anna Linusson
    Hierarchical PLS Modeling for Predicting the Binding of a Comprehensive Set of Structurally Diverse Protein-Ligand Complexes. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1154-1167 [Journal]
  27. Stuart Firth-Clark, Nikolay P. Todorov, Ian L. Alberts, Anthony Williams, Timothy James, Philip M. Dean
    Exhaustive de novo Design of Low-Molecular-Weight Fragments Against the ATP-Binding Site of DNA-Gyrase. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1168-1173 [Journal]
  28. Laleh Alisaraie, Lars A. Haller, Gregor Fels
    A QXP-Based Multistep Docking Procedure for Accurate Prediction of Protein-Ligand Complexes. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1174-1187 [Journal]
  29. Philippa R. N. Wolohan, Lakshmi B. Akella, Roman J. Dorfman, Peter G. Nell, Stefan M. Mundt, Robert D. Clark
    Structural Unit Analysis Identifies Lead Series and Facilitates Scaffold Hopping in Combinatorial Chemistry. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1188-1193 [Journal]
  30. Milan Remko, Claus-Wilhelm von der Lieth
    Gas-Phase and Solution Conformations of the alpha-L-Iduronic Acid Structural Unit of Heparin. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1194-1200 [Journal]
  31. Thierry Kogej, Ola Engkvist, Niklas Blomberg, Sorel Muresan
    Multifingerprint Based Similarity Searches for Targeted Class Compound Selection. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1201-1213 [Journal]
  32. Artem Cherkasov
    Can 'Bacterial-Metabolite-Likeness' Model Improve Odds of 'in Silico' Antibiotic Discovery?. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1214-1222 [Journal]
  33. Alessandra Fano, David W. Ritchie, Antonio Carrieri
    Modeling the Structural Basis of Human CCR5 Chemokine Receptor Function: From Homology Model Building and Molecular Dynamics Validation to Agonist and Antagonist Docking. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1223-1235 [Journal]
  34. Deepangi Pandit, Sung-Sau So, Hongmao Sun
    Enhancing Specificity and Sensitivity of Pharmacophore-Based Virtual Screening by Incorporating Chemical and Shape Features-A Case Study of HIV Protease Inhibitors. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1236-1244 [Journal]
  35. Patricia de Cerqueira Lima, Alexander Golbraikh, Scott Oloff, Yunde Xiao, Alexander Tropsha
    Combinatorial QSAR Modeling of P-Glycoprotein Substrates. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1245-1254 [Journal]
  36. Julio Caballero, Leyden Fernández, José Ignacio Abreu, Michael Fernández
    Amino Acid Sequence Autocorrelation Vectors and Ensembles of Bayesian-Regularized Genetic Neural Networks for Prediction of Conformational Stability of Human Lysozyme Mutants. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1255-1268 [Journal]
  37. Mamoru Sakai, Kazuo Toyota, Takeji Takui
    A Quantum and Deductive Chemical Study for All Congeners of Polybromo/Chlorodibenzo-p-dioxin and Polybromo/Chlorodibenzofuran. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1269-1275 [Journal]
  38. Toshiaki Matsubara, Masashi Ishikura, Misako Aida
    A Quantum Chemical Study of the Catalysis for Cytidine Deaminase: Contribution of the Extra Water Molecule. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1276-1285 [Journal]
  39. Joong-Youn Shim, Allyn C. Howlett
    WIN55212-2 Docking to the CB1 Cannabinoid Receptor and Multiple Pathways for Conformational Induction. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1286-1300 [Journal]
  40. Daniela Schuster, Christian Laggner, Theodora M. Steindl, Anja Palusczak, Rolf W. Hartmann, Thierry Langer
    Pharmacophore Modeling and in Silico Screening for New P450 19 (Aromatase) Inhibitors. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1301-1311 [Journal]
  41. Munikumar R. Doddareddy, Yong Seo Cho, Hun Yeong Koh, Dong Hyun Kim, Ae Nim Pae
    In Silico Renal Clearance Model Using Classical Volsurf Approach. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1312-1320 [Journal]
  42. Tulay Ercanli, Donald B. Boyd
    Exploration of the Conformational Space of a Polymeric Material that Inhibits Human Immunodeficiency Virus. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1321-1333 [Journal]
  43. Micael Jacobsson, Anders Karlén
    Ligand Bias of Scoring Functions in Structure-Based Virtual Screening. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1334-1343 [Journal]
  44. Fabrizio Manetti, Cristina Tintori, Mercedes Armand-Ugón, Imma Clotet-Codina, Silvio Massa, Rino Ragno, José A. Esté, Maurizio Botta
    A Combination of Molecular Dynamics and Docking Calculations to Explore the Binding Mode of ADS-J1, a Polyanionic Compound Endowed with Anti-HIV-1 Activity. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1344-1351 [Journal]
  45. Jun Feng, Ashish P. Sanil, S. Stanley Young
    PharmID: Pharmacophore Identification Using Gibbs Sampling. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1352-1359 [Journal]
  46. Nidhi Singh, Gwénaël Chevé, Mitchell A. Avery, Christopher R. McCurdy
    Comparative Protein Modeling of 1-Deoxy-D-xylulose-5-phosphate Reductoisomerase Enzyme from Plasmodium falciparum: A Potential Target for Antimalarial Drug Discovery. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1360-1370 [Journal]
  47. Katsumi Yoshida, Tomoko Niwa
    Quantitative Structure-Activity Relationship Studies on Inhibition of HERG Potassium Channels. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1371-1378 [Journal]
  48. Pierre Bruneau, Nathan R. McElroy
    logD7.4 Modeling Using Bayesian Regularized Neural Networks. Assessment and Correction of the Errors of Prediction. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1379-1387 [Journal]
  49. Xavier Gironés, Robert Ponec
    Molecular Quantum Similarity Measures from Fermi Hole Densities: Modeling Hammett Sigma Constants. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1388-1393 [Journal]
  50. Dhrubajyoti Biswas, Sujata Roy, Srikanta Sen
    A Simple Approach for Indexing the Oral Druglikeness of a Compound: Discriminating Druglike Compounds from Nondruglike Ones. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1394-1401 [Journal]
  51. Sven Serneels, Evert De Nolf, Pierre J. Van Espen
    Spatial Sign Preprocessing: A Simple Way To Impart Moderate Robustness to Multivariate Estimators. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1402-1409 [Journal]
  52. Eric Deconinck, Menghui H. Zhang, Danny Coomans, Yvan Vander Heyden
    Classification Tree Models for the Prediction of Blood-Brain Barrier Passage of Drugs. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1410-1419 [Journal]
  53. Rino Ragno, Silvia Simeoni, Sergio Valente, Silvio Massa, Antonello Mai
    3-D QSAR Studies on Histone Deacetylase Inhibitors. A GOLPE/GRID Approach on Different Series of Compounds. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1420-1430 [Journal]
  54. Máté Dervarics, Ferenc Ötvös, Tamás A. Martinek
    Development of a Chirality-Sensitive Flexibility Descriptor for 3+3D-QSAR. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1431-1438 [Journal]
  55. Joan R. Cucarull-González, Christian Laggner, Thierry Langer
    Influence of the Conditions in Pharmacophore Generation, Scoring, and 3D Database Search for Chemical Feature-Based Pharmacophore Models: One Application Study of ETA- and ETB-Selective Antagonists. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1439-1455 [Journal]
  56. Markus H. J. Seifert
    Assessing the Discriminatory Power of Scoring Functions for Virtual Screening. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1456-1465 [Journal]
  57. Laura Maccari, Matteo Magnani, Giovannella Strappaghetti, Federico Corelli, Maurizio Botta, Fabrizio Manetti
    A Genetic-Function-Approximation-Based QSAR Model for the Affinity of Arylpiperazines toward alpha1 Adrenoceptors. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1466-1478 [Journal]
  58. Joji M. Otaki, Akihito Mori, Yoshimasa Itoh, Takashi Nakayama, Haruhiko Yamamoto
    Alignment-Free Classification of G-Protein-Coupled Receptors Using Self-Organizing Maps. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1479-1490 [Journal]
  59. Channa K. Hattotuwagama, Christopher P. Toseland, Pingping Guan, Debra J. Taylor, Shelley L. Hemsley, Irini A. Doytchinova, Darren R. Flower
    Toward Prediction of Class II Mouse Major Histocompatibility Complex Peptide Binding Affinity: in Silico Bioinformatic Evaluation Using Partial Least Squares, a Robust Multivariate Statistical Technique. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1491-1502 [Journal]
  60. M. Michael Gromiha, Samuel Selvaraj, A. Mary Thangakani
    A Statistical Method for Predicting Protein Unfolding Rates from Amino Acid Sequence. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1503-1508 [Journal]
  61. Dimitri Gilis
    In Silico Analysis of the Thermodynamic Stability Changes of Psychrophilic and Mesophilic alpha-Amylases upon Exhaustive Single-Site Mutations. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1509-1516 [Journal]
  62. Cindy Benod, Marc-André Delsuc, Jean-Luc Pons
    CRAACK: Consensus Program for NMR Amino Acid Type Assignment. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1517-1522 [Journal]
  63. Salvador Sagrado, Mark T. D. Cronin
    Diagnostic Tools to Determine the Quality of "Transparent" Regression-Based QSARs: The "Modelling Power" Plot. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2006, v:46, n:3, pp:1523-1532 [Journal]
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