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Terence P. Speed: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Tim Beißbarth, Jason A. Tye-Din, Gordon K. Smyth, Terence P. Speed, Robert P. Anderson
    A systematic approach for comprehensive T-cell epitope discovery using peptide libraries. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2005, pp:29-37 [Conf]
  2. Shili Lin, Terence P. Speed
    An algorithm for haplotype analysis. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:192-200 [Conf]
  3. Terence P. Speed
    Low-level analyses of microarray data. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2003, pp:287-287 [Conf]
  4. Terence P. Speed
    Variations on a theme of Lander and Waterman (abstract). [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:293- [Conf]
  5. Xiaoyue Zhao, Haiyan Huang, Terence P. Speed
    Finding short DNA motifs using permuted markov models. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:68-75 [Conf]
  6. Yee Hwa Yang, Michael J. Buckley, Terence P. Speed
    Analysis of CDNA Microarray Images. [Citation Graph (0, 0)][DBLP]
    Briefings in Bioinformatics, 2001, v:2, n:4, pp:341-349 [Journal]
  7. Benjamin M. Bolstad, Rafael A. Irizarry, Magnus Åstrand, Terence P. Speed
    A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:2, pp:185-193 [Journal]
  8. Leslie Cope, Rafael A. Irizarry, Harris A. Jaffee, Zhijin Wu, Terence P. Speed
    A benchmark for Affymetrix GeneChip expression measures. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:3, pp:323-331 [Journal]
  9. Mauro Delorenzi, Terence P. Speed
    An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:4, pp:617-625 [Journal]
  10. Nusrat Rabbee, Terence P. Speed
    A genotype calling algorithm for affymetrix SNP arrays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:1, pp:7-12 [Journal]
  11. Simon Cawley, Terence P. Speed
    DNA Sequencing with Transposons. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:5, pp:717-729 [Journal]
  12. M.-Y. Leung, G. M. Marsh, Terence P. Speed
    Over- and Underrepresentation of Short DNA Words in Herpesvirus Genomes. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1996, v:3, n:3, pp:345-360 [Journal]
  13. Shili Lin, Terence P. Speed
    An Algorithm for Haplotype Analysis. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:4, pp:535-546 [Journal]
  14. Xiaoyue Zhao, Haiyan Huang, Terence P. Speed
    Finding Short DNA Motifs Using Permuted Markov Models. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:894-906 [Journal]
  15. Benjamin I. P. Rubinstein, Jon D. McAuliffe, Simon Cawley, Marimuthu Palaniswami, Kotagiri Ramamohanarao, Terence P. Speed
    Machine learning in low-level microarray analysis. [Citation Graph (0, 0)][DBLP]
    SIGKDD Explorations, 2003, v:5, n:2, pp:130-139 [Journal]

  16. Estimation and assessment of raw copy numbers at the single locus level. [Citation Graph (, )][DBLP]


  17. FIRMA: a method for detection of alternative splicing from exon array data. [Citation Graph (, )][DBLP]


  18. Sparse combinatorial inference with an application in cancer biology. [Citation Graph (, )][DBLP]


  19. A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods. [Citation Graph (, )][DBLP]


  20. A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [Citation Graph (, )][DBLP]


  21. A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments. [Citation Graph (, )][DBLP]


  22. A comparison of Affymetrix gene expression arrays. [Citation Graph (, )][DBLP]


  23. Differential splicing using whole-transcript microarrays. [Citation Graph (, )][DBLP]


  24. TumorBoost: Normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays. [Citation Graph (, )][DBLP]


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