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Publications of Author

1. John A. Berger, Sampsa Hautaniemi, Sanjit K. Mitra
   Comparative Analysis of Gene Expression and DNA Copy Number Data for Pancreatic and Breast Cancers Using an Orthogonal Decomposition. [Citation Graph (0, 0)][DBLP]
   CSB, 2004, pp:584-585 [Conf]
   
2. Reija Autio, Sampsa Hautaniemi, Päivikki Kauraniemi, Olli Yli-Harja, Jaakko Astola, Maija Wolf, Anne Kallioniemi
   CGH-Plotter: MATLAB toolbox for CGH-data analysis. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2003, v:19, n:13, pp:1714-1715 [Journal]
   
3. Sampsa Hautaniemi, Henrik Edgren, Petri Vesanen, Maija Wolf, Anna-Kaarina Järvinen, Olli Yli-Harja, Jaakko Astola, Olli-P. Kallioniemi, Outi Monni
   A novel strategy for microarray quality control using Bayesian networks. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2003, v:19, n:16, pp:2031-2038 [Journal]
   
4. Sampsa Hautaniemi, Sourabh Kharait, Akihiro Iwabu, Alan Wells, Douglas A. Lauffenburger
   Modeling of signal-response cascades using decision tree analysis. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2005, v:21, n:9, pp:2027-2035 [Journal]
   
5. John A. Berger, Sampsa Hautaniemi, Anna-Kaarina Järvinen, Henrik Edgren, Sanjit K. Mitra, Jaakko Astola
   Optimized LOWESS normalization parameter selection for DNA microarray data. [Citation Graph (0, 0)][DBLP]
   BMC Bioinformatics, 2004, v:5, n:, pp:194- [Journal]
   
6. Sampsa Hautaniemi, Olli Yli-Harja, Jaakko Astola, Päivikki Kauraniemi, Anne Kallioniemi, Maija Wolf, Jimmy Ruiz, Spyro Mousses, Olli-P. Kallioniemi
   Analysis and Visualization of Gene Expression Microarray Data in Human Cancer Using Self-Organizing Maps. [Citation Graph (0, 0)][DBLP]
   Machine Learning, 2003, v:52, n:1-2, pp:45-66 [Journal]
   
7. John A. Berger, Sampsa Hautaniemi, Sanjit K. Mitra, Jaakko Astola
   Jointly Analyzing Gene Expression and Copy Number Data in Breast Cancer Using Data Reduction Models. [Citation Graph (0, 0)][DBLP]
   IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:1, pp:2-16 [Journal]
   
8. Harri Lähdesmäki, Sampsa Hautaniemi, Ilya Shmulevich, Olli Yli-Harja
   Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks. [Citation Graph (0, 0)][DBLP]
   Signal Processing, 2006, v:86, n:4, pp:814-834 [Journal]
   
9. 
   Computational identification of candidate loci for recessively inherited mutation using high-throughput SNP arrays. [Citation Graph (, )][DBLP]
   
   
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    Integrative platform to translate gene sets to networks. [Citation Graph (, )][DBLP]
    
    
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    Advanced analysis and visualization of gene copy number and expression data. [Citation Graph (, )][DBLP]
    
    
12. 
    Comparison of Affymetrix data normalization methods using 6, 926 experiments across five array generations. [Citation Graph (, )][DBLP]