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Charles L. Brooks III: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Michela Taufer, Patricia J. Teller, David P. Anderson, Charles L. Brooks III
    Metrics for Effective Resource Management in Global Computing Environments. [Citation Graph (0, 0)][DBLP]
    e-Science, 2005, pp:204-211 [Conf]
  2. Anand Natrajan, Anthony D. Fox, Marty A. Humphrey, Andrew S. Grimshaw, Nancy Wilkins-Diehr, Michael Crowley, Charles L. Brooks III
    Studying Protein Folding on the Grid: Experiences Using CHARMM on NPACI Resources under Legion. [Citation Graph (0, 0)][DBLP]
    HPDC, 2001, pp:14-21 [Conf]
  3. Derrick Kondo, Michela Taufer, Charles L. Brooks III, Henri Casanova, Andrew A. Chien
    Characterizing and Evaluating Desktop Grids: An Empirical Study. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2004, pp:- [Conf]
  4. Michela Taufer, David P. Anderson, Pietro Cicotti, Charles L. Brooks III
    Homogeneous Redundancy: a Technique to Ensure Integrity of Molecular Simulation Results Using Public Computing. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2005, pp:- [Conf]
  5. Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III
    Predictor@Home: A "Protein Structure Prediction Supercomputer" Based on Public-Resource Computing. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2005, pp:- [Conf]
  6. Michela Taufer, Michael Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III
    Study of a Highly Accurate and Fast Protein-Ligand Docking Algorithm Based on Molecular Dynamics. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2004, pp:- [Conf]
  7. Anand Natrajan, Michael Crowley, Nancy Wilkins-Diehr, Marty A. Humphrey, Anthony D. Fox, Andrew S. Grimshaw, Charles L. Brooks III
    Studying protein folding on the Grid: experiences using CHARMM on NPACI resources under Legion. [Citation Graph (0, 0)][DBLP]
    Concurrency and Computation: Practice and Experience, 2004, v:16, n:4, pp:385-397 [Journal]
  8. Michela Taufer, Michael Crowley, Daniel J. Price, Andrew A. Chien, Charles L. Brooks III
    Study of a highly accurate and fast protein-ligand docking method based on molecular dynamics. [Citation Graph (0, 0)][DBLP]
    Concurrency and Computation: Practice and Experience, 2005, v:17, n:14, pp:1627-1641 [Journal]
  9. Badry D. Bursulaya, Maxim Totrov, Ruben Abagyan, Charles L. Brooks III
    Comparative study of several algorithms for flexible ligand docking. [Citation Graph (0, 0)][DBLP]
    Journal of Computer-Aided Molecular Design, 2003, v:17, n:11, pp:755-763 [Journal]
  10. Brian N. Dominy, Charles L. Brooks III
    Identifying native-like protein structures using physics-based potentials. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2002, v:23, n:1, pp:147-160 [Journal]
  11. Michael Feig, Alexey Onufriev, Michael S. Lee, Wonpil Im, David A. Case, Charles L. Brooks III
    Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2004, v:25, n:2, pp:265-284 [Journal]
  12. Olgun Guvench, Charles L. Brooks III
    Efficient approximate all-atom solvent accessible surface area method parameterized for folded and denatured protein conformations. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2004, v:25, n:8, pp:1005-1014 [Journal]
  13. Wonpil Im, Michael S. Lee, Charles L. Brooks III
    Generalized born model with a simple smoothing function. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2003, v:24, n:14, pp:1691-1702 [Journal]
  14. Michael S. Lee, Michael Feig, Freddie R. Salsbury Jr., Charles L. Brooks III
    New analytic approximation to the standard molecular volume definition and its application to generalized Born calculations. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2003, v:24, n:11, pp:1348-1356 [Journal]
  15. Michael S. Lee, Michael Feig, Freddie R. Salsbury Jr., Charles L. Brooks III
    New analytic approximation to the standard molecular volume definition and its application to generalized born calculations - Erratum. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2003, v:24, n:14, pp:1821- [Journal]
  16. Alexander D. MacKerell Jr., Michael Feig, Charles L. Brooks III
    Extending the treatment of backbone energetics in protein force fields: Limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2004, v:25, n:11, pp:1400-1415 [Journal]
  17. Daniel J. Price, Charles L. Brooks III
    Modern protein force fields behave comparably in molecular dynamics simulations. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2002, v:23, n:11, pp:1045-1057 [Journal]
  18. Sandeep Patel, Charles L. Brooks III
    CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2004, v:25, n:1, pp:1-16 [Journal]
  19. Sandeep Patel, Alexander D. MacKerell Jr., Charles L. Brooks III
    CHARMM fluctuating charge force field for proteins: II Protein/solvent properties from molecular dynamics simulations using a nonadditive electrostatic model. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2004, v:25, n:12, pp:1504-1514 [Journal]
  20. Michal Vieth, Jonathan D. Hirst, Brian N. Dominy, Heidi Daigler, Charles L. Brooks III
    Assessing search strategies for flexible docking. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 1998, v:19, n:14, pp:1623-1631 [Journal]
  21. Michal Vieth, Jonathan D. Hirst, Andrzej Kolinski, Charles L. Brooks III
    Assessing energy functions for flexible docking. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 1998, v:19, n:14, pp:1612-1622 [Journal]
  22. Guosheng Wu, Daniel H. Robertson, Charles L. Brooks III, Michal Vieth
    Detailed analysis of grid-based molecular docking: A case study of CDOCKER - A CHARMm-based MD docking algorithm. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2003, v:24, n:13, pp:1549-1562 [Journal]
  23. William S. Young, Charles L. Brooks III
    Implementation of a Data Parallel, Logical Domain Decomposition Method for Interparticle Interactions in Molecular Dynamics of Structured Molecular Fluids. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 1994, v:15, n:1, pp:44-53 [Journal]
  24. William S. Young, Charles L. Brooks III
    Dynamic Load Balancing Algorithms for Replicated Data Molecular Dynamics. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 1995, v:16, n:6, pp:715-722 [Journal]
  25. Daniel J. Price, Charles L. Brooks III
    Detailed considerations for a balanced and broadly applicable force field: A study of substituted benzenes modeled with OPLS-AA. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2005, v:26, n:14, pp:1529-1541 [Journal]
  26. Charles L. Brooks III
    Editorial. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2005, v:26, n:16, pp:1667- [Journal]
  27. Jianhan Chen, Wonpil Im, Charles L. Brooks III
    Application of torsion angle molecular dynamics for efficient sampling of protein conformations. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Chemistry, 2005, v:26, n:15, pp:1565-1578 [Journal]
  28. Craig M. Shepherd, Ian A. Borelli, Gabriel Lander, Padmaja Natarajan, Vinay Siddavanahalli, Chandrajit L. Bajaj, John E. Johnson, Charles L. Brooks III, Vijay S. Reddy
    VIPERdb: a relational database for structural virology. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:386-389 [Journal]
  29. Michela Taufer, Chahm An, Andreas Kerstens, Charles L. Brooks III
    Predictor@Home: A "Protein Structure Prediction Supercomputer' Based on Global Computing. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 2006, v:17, n:8, pp:786-796 [Journal]
  30. Michela Taufer, Andre Kerstens, Trilce Estrada, David A. Flores, Richard Zamudio, Patricia J. Teller, R. Armen, Charles L. Brooks III
    Moving Volunteer Computing towards Knowledge-Constructed, Dynamically-Adaptive Modeling and Scheduling. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2007, pp:1-8 [Conf]

  31. De novo modeling of GPCR class A structures. [Citation Graph (, )][DBLP]


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