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Journals in DBLP

Nucleic Acids Research
2006, volume: 34, number: Database-Issue

  1. Alex Bateman
    EDITORIAL. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:1- [Journal]
  2. Michael Y. Galperin
    The Molecular Biology Database Collection: 2006 update. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:3-5 [Journal]
  3. Kousaku Okubo, Hideaki Sugawara, Takashi Gojobori, Yoshio Tateno
    DDBJ in preparation for overview of research activities behind data submissions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:6-9 [Journal]
  4. Guy Cochrane, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Wendy Baker, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Paul Browne, Alexandra van den Broek, Matias Castro, Karyn Duggan, Ruth Eberhardt, Nadeem Faruque, John Gamble, Carola Kanz, Tamara Kulikova, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Michelle McHale, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Siamak Sobhany, Peter Stoehr, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
    EMBL Nucleotide Sequence Database: developments in 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:10-15 [Journal]
  5. Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler
    GenBank. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:16-20 [Journal]
  6. Namshin Kim, Pora Kim, Seungyoon Nam, Seokmin Shin, Sanghyuk Lee
    ChimerDB - a knowledgebase for fusion sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:21-24 [Journal]
  7. K. T. Nishant, Kumar Chetan, M. R. S. Rao
    HUMHOT: a database of human meiotic recombination hot spots. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:25-28 [Journal]
  8. Rivka L. Glaser, Joshua P. Ramsay, Ian M. Morison
    The imprinted gene and parent-of-origin effect database now includes parental origin of de novo mutations. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:29-31 [Journal]
  9. P. Siguier, J. Perochon, L. Lestrade, J. Mahillon, M. Chandler
    ISfinder: the reference centre for bacterial insertion sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:32-36 [Journal]
  10. Grant H. Jacobs, Peter A. Stockwell, Warren Tate, Chris M. Brown
    Transterm - extended search facilities and improved integration with other databases. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:37-40 [Journal]
  11. Jeremy D. Glasner, Michael Rusch, Paul Liss, Guy Plunkett III, Eric L. Cabot, Aaron E. Darling, Bradley D. Anderson, Paul Infield-Harm, Michael C. Gilson, Nicole T. Perna
    ASAP: a resource for annotating, curating, comparing, and disseminating genomic data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:41-45 [Journal]
  12. Stefan Stamm, Jean-Jack M. Riethoven, Vincent Le Texier, Chellappa Gopalakrishnan, Vasudev Kumanduri, Yesheng Tang, Nuno L. Barbosa-Morais, Thangavel Alphonse Thanaraj
    ASD: a bioinformatics resource on alternative splicing. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:46-55 [Journal]
  13. Dirk Holste, George Huo, Vivian Tung, Christopher B. Burge
    HOLLYWOOD: a comparative relational database of alternative splicing. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:56-62 [Journal]
  14. Enrique Blanco, Domènec Farré, M. Mar Albà, Xavier Messeguer, Roderic Guigó
    ABS: a database of Annotated regulatory Binding Sites from orthologous promoters. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:63-67 [Journal]
  15. Gordon Robertson, Misha Bilenky, K. Lin, A. He, W. Yuen, M. Dagpinar, Richard Varhol, Kevin Teague, Obi L. Griffith, X. Zhang, Y. Pan, Maik Hassel, Monica C. Sleumer, W. Pan, Erin Pleasance, M. Chuang, H. Hao, Yvonne Y. Li, Neil Robertson, C. Fjell, B. Li, Stephen Montgomery, Tamara Astakhova, Jianjun Zhou, Jörg Sander, Asim S. Siddiqui, Steven J. M. Jones
    cisRED: a database system for genome-scale computational discovery of regulatory elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:68-73 [Journal]
  16. Sarah K. Kummerfeld, Sarah A. Teichmann
    DBD: a transcription factor prediction database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:74-81 [Journal]
  17. Christoph D. Schmid, Rouaïda Périer, Viviane Praz, Philipp Bucher
    EPD in its twentieth year: towards complete promoter coverage of selected model organisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:82-85 [Journal]
  18. Riu Yamashita, Yutaka Suzuki, Hiroyuki Wakaguri, Katsuki Tsuritani, Kenta Nakai, Sumio Sugano
    DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:86-89 [Journal]
  19. Vidhya Jagannathan, Emmanuelle Roulet, Mauro Delorenzi, Philipp Bucher
    HTPSELEX - a database of high-throughput SELEX libraries for transcription factor binding sites. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:90-94 [Journal]
  20. Dominique Vlieghe, Albin Sandelin, Pieter J. De Bleser, Kris Vleminckx, Wyeth W. Wasserman, Frans van Roy, Boris Lenhard
    A new generation of JASPAR, the open-access repository for transcription factor binding site profiles. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:95-97 [Journal]
  21. Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim H.-M. Huang, Ramana V. Davuluri
    MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:98-103 [Journal]
  22. Xin Chen, Jian-Min Wu, Klaus Hornischer, Alexander E. Kel, Edgar Wingender
    TiProD: the Tissue-specific Promoter Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:104-107 [Journal]
  23. V. Matys, Olga V. Kel-Margoulis, Ellen Fricke, Ines Liebich, Sigrid Land, A. Barre-Dirrie, Ingmar Reuter, D. Chekmenev, Mathias Krull, Klaus Hornischer, Nico Voss, P. Stegmaier, Birgit Lewicki-Potapov, H. Saxel, Alexander E. Kel, Edgar Wingender
    TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:108-110 [Journal]
  24. Tala Bakheet, Bryan R. G. Williams, Khalid S. A. Khabar
    ARED 3.0: the large and diverse AU-rich transcriptome. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:111-114 [Journal]
  25. Priyanka Shahi, Serguei Loukianiouk, Andreas Bohne-Lang, Marc Kenzelmann, Stefan Küffer, Sabine Maertens, Roland Eils, Hermann-Josef Gröne, Norbert Gretz, Benedikt Brors
    Argonaute - a database for gene regulation by mammalian microRNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:115-118 [Journal]
  26. Rumen Kostadinov, Nishtha Malhotra, Manuel Viotti, Robert Shine, Lawrence D'Antonio, Paramjeet Bagga
    GRSDB: a database of quadruplex forming G-rich sequences in alternatively processed mammalian pre-mRNA sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:119-124 [Journal]
  27. Martin Mokrejs, Václav Vopálensky, Ondrej Kolenaty, Tomás Masek, Zuzana Feketová, Petra Sekyrová, Barbora Skaloudová, Vítezslav Kríz, Martin Pospísek
    IRESite: the database of experimentally verified IRES structures (www.iresite.org). [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:125-130 [Journal]
  28. Liliana R. Stefan, Rui Zhang, Aaron G. Levitan, Donna K. Hendrix, Steven E. Brenner, Stephen R. Holbrook
    MeRNA: a database of metal ion binding sites in RNA structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:131-134 [Journal]
  29. Paul W. C. Hsu, Hsien-Da Huang, Sheng-Da Hsu, Li-Zen Lin, Ann-Ping Tsou, Ching-Ping Tseng, Peter F. Stadler, Stefan Washietl, Ivo L. Hofacker
    miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:135-139 [Journal]
  30. Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright
    miRBase: microRNA sequences, targets and gene nomenclature. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:140-144 [Journal]
  31. Stanislaw Dunin-Horkawicz, Anna Czerwoniec, Michal J. Gajda, Marcin Feder, Henri Grosjean, Janusz M. Bujnicki
    MODOMICS: a database of RNA modification pathways. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:145-149 [Journal]
  32. Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baochen Shi, Xiaopeng Zhu, Zhihua Zhang, Geir Skogerbø, Lan Chen, Hongchao Lu, Yi Zhao, Runsheng Chen
    NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:150-152 [Journal]
  33. A. Olson, N. Sheth, J. S. Lee, G. Hannon, R. Sachidanandam
    RNAi Codex: a portal/database for short-hairpin RNA (shRNA) gene-silencing constructs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:153-157 [Journal]
  34. Laurent Lestrade, Michel J. Weber
    snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:158-162 [Journal]
  35. Ebbe Sloth Andersen, Magnus Alm Rosenblad, Niels Larsen, Jesper Cairo Westergaard, Jody Burks, Iwona K. Wower, Jacek Wower, Jan Gorodkin, Tore Samuelsson, Christian Zwieb
    The tmRDB and SRPDB resources. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:163-168 [Journal]
  36. Hans-Werner Mewes, Dmitrij Frishman, Klaus F. X. Mayer, Martin Münsterkötter, Octave Noubibou, Philipp Pagel, Thomas Rattei, Matthias Oesterheld, Andreas Ruepp, Volker Stümpflen
    MIPS: analysis and annotation of proteins from whole genomes in 2005. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:169-172 [Journal]
  37. David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David L. Kenton, Oleg Khovayko, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Stephen T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tugba O. Suzek, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko
    Database resources of the National Center for Biotechnology Information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:173-180 [Journal]
  38. Milton H. Saier Jr., Can V. Tran, Ravi D. Barabote
    TCDB: the Transporter Classification Database for membrane transport protein analyses and information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:181-186 [Journal]
  39. Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek
    The Universal Protein Resource (UniProt): an expanding universe of protein information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:187-191 [Journal]
  40. Jason P. Mulvenna, Conan Wang, David J. Craik
    CyBase: a database of cyclic protein sequence and structure. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:192-194 [Journal]
  41. M. D. Shaji Kumar, M. Michael Gromiha
    PINT: Protein-protein Interactions Thermodynamic Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:195-198 [Journal]
  42. Christopher P. Toseland, Helen M. McSparron, Matthew N. Davies, Darren R. Flower
    PPD v1.0 - an integrated, web-accessible database of experimentally determined protein pKa values. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:199-203 [Journal]
  43. M. D. Shaji Kumar, K. Abdulla Bava, M. Michael Gromiha, Ponraj Prabakaran, Koji Kitajima, Hatsuho Uedaira, Akinori Sarai
    ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:204-206 [Journal]
  44. Michelle K. M. Chow, Abdullah A. Amin, Kate F. Fulton, Thushan Fernando, Lawrence Kamau, Chris Batty, Michael Louca, Storm Ho, James C. Whisstock, Stephen P. Bottomley, Ashley M. Buckle
    The REFOLD database: a tool for the optimization of protein expression and refolding. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:207-212 [Journal]
  45. J. Lynn Fink, Rajith N. Aturaliya, Melissa J. Davis, Fasheng Zhang, Kelly Hanson, Melvena S. Teasdale, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Rohan D. Teasdale
    LOCATE: a mouse protein subcellular localization database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:213-217 [Journal]
  46. Anthony Kar Lun Leung, Laura Trinkle-Mulcahy, Yun Wah Lam, Jens S. Andersen, Matthias Mann, Angus I. Lamond
    NOPdb: Nucleolar Proteome Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:218-220 [Journal]
  47. Rainer B. Lanz, Zeljko Jericevic, William J. Zuercher, Chris Watkins, David L. Steffen, Ronald Margolis, Neil J. McKenna
    Nuclear Receptor Signaling Atlas (www.nursa.org): hyperlinking the nuclear receptor signaling community. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:221-226 [Journal]
  48. Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Edouard De Castro, Petra S. Langendijk-Genevaux, Marco Pagni, Christian J. A. Sigrist
    The PROSITE database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:227-230 [Journal]
  49. Nicola D. Gold, Richard M. Jackson
    SitesBase: a database for structure-based protein-ligand binding site comparisons. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:231-234 [Journal]
  50. Aaron Birkland, Golan Yona
    BIOZON: a hub of heterogeneous biological data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:235-242 [Journal]
  51. V. S. Gowri, O. Krishnadev, C. S. Swamy, Narayanaswamy Srinivasan
    MulPSSM: a database of multiple position-specific scoring matrices of protein domain families. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:243-246 [Journal]
  52. Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman
    Pfam: clans, web tools and services. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:247-251 [Journal]
  53. Thomas Rattei, Roland Arnold, Patrick Tischler, Dominik Lindner, Volker Stümpflen, Hans-Werner Mewes
    SIMAP: the similarity matrix of proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:252-256 [Journal]
  54. Ivica Letunic, Richard R. Copley, Birgit Pils, Stefan Pinkert, Jörg Schultz, Peer Bork
    SMART 5: domains in the context of genomes and networks. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:257-260 [Journal]
  55. Alexander A. Zamyatnin, Alexander S. Borchikov, Michail G. Vladimirov, Olga L. Voronina
    The EROP-Moscow oligopeptide database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:261-266 [Journal]
  56. Marco Donizelli, Marie-Ange Djite, Nicolas Le Novère
    LGICdb: a manually curated sequence database after the genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:267-269 [Journal]
  57. Neil D. Rawlings, Fraser R. Morton, Alan J. Barrett
    MEROPS: the peptidase database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:270-272 [Journal]
  58. Chittibabu Guda, Lipika R. Pal, Ilya N. Shindyalov
    DMAPS: a database of multiple alignments for protein structures. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:273-276 [Journal]
  59. Zhanwen Li, Yuzhen Ye, Adam Godzik
    Flexible Structural Neighborhood - a database of protein structural similarities and alignments. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:277-280 [Journal]
  60. Corin Yeats, Michael Maibaum, Russell L. Marsden, Mark Dibley, David Lee, Sarah Addou, Christine A. Orengo
    Gene3D: modelling protein structure, function and evolution. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:281-284 [Journal]
  61. Ganesan Pugalenthi, Anirban Bhaduri, Ramanathan Sowdhamini
    iMOTdb - a comprehensive collection of spatially interacting motifs in proteins. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:285-286 [Journal]
  62. Mohammed Tagari, John G. Tate, G. J. Swaminathan, Richard Newman, Avi Naim, Wim Vranken, A. Kapopoulou, A. Hussain, Joël Fillon, Kim Henrick, Samir S. Velankar
    E-MSD: improving data deposition and structure quality. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:287-290 [Journal]
  63. Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali
    MODBASE: a database of annotated comparative protein structure models and associated resources. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:291-295 [Journal]
  64. Samuel Flores, Nathaniel Echols, Duncan Milburn, Brandon Hespenheide, Kevin Keating, Jason Lu, Stephen Wells, Eric Z. Yu, Michael Thorpe, Mark Gerstein
    The Database of Macromolecular Motions: new features added at the decade mark. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:296-301 [Journal]
  65. Andrei Kouranov, Lei Xie, Joanna de la Cruz, Li Chen, John D. Westbrook, Philip E. Bourne, Helen M. Berman
    The RCSB PDB information portal for structural genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:302-305 [Journal]
  66. Tiziana Castrignanò, Paolo D'Onorio De Meo, Domenico Cozzetto, Ivano Giuseppe Talamo, Anna Tramontano
    The PMDB Protein Model Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:306-309 [Journal]
  67. Christof Winter, Andreas Henschel, Wan Kyu Kim, Michael Schroeder
    SCOPPI: a structural classification of protein-protein interfaces. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:310-314 [Journal]
  68. Jürgen Kopp, Torsten Schwede
    The SWISS-MODEL Repository: new features and functionalities. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:315-318 [Journal]
  69. Tina A. Eyre, Fabrice Ducluzeau, Tam P. Sneddon, Sue Povey, Elspeth A. Bruford, Michael J. Lush
    The HUGO Gene Nomenclature Database, 2006 updates. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:319-321 [Journal]

  70. The Gene Ontology (GO) project in 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:322-326 [Journal]
  71. Simon Whelan, Paul I. W. De Bakker, Emmanuel Quevillon, Nicolas Rodriguez, Nick Goldman
    PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:327-331 [Journal]
  72. Konstantinos Liolios, Nektarios Tavernarakis, Philip Hugenholtz, Nikos Kyrpides
    The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:332-334 [Journal]
  73. Roy R. Chaudhuri, Mark J. Pallen
    xBASE, a collection of online databases for bacterial comparative genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:335-337 [Journal]
  74. Emmanuel Perrodou, Caroline Deshayes, Jean Muller, Christine Schaeffer, Alain Van Dorsselaer, Raymond Ripp, Olivier Poch, Jean-Marc Reyrat, Odile Lecompte
    ICDS database: interrupted CoDing sequences in prokaryotic genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:338-343 [Journal]
  75. Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
    The integrated microbial genomes (IMG) system. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:344-348 [Journal]
  76. Ingo Paulsen, Arndt von Haeseler
    INVHOGEN: a database of homologous invertebrate genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:349-353 [Journal]
  77. Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa
    From genomics to chemical genomics: new developments in KEGG. [Citation Graph (0, 0)][DBLP]
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    PUMA2 - grid-based high-throughput analysis of genomes and metabolic pathways. [Citation Graph (0, 0)][DBLP]
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  81. Huiquan Wang, Miroslava Kaloper, Craig J. Benham
    SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes. [Citation Graph (0, 0)][DBLP]
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    VMD: a community annotation database for oomycetes and microbial genomes. [Citation Graph (0, 0)][DBLP]
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    DPVweb: a comprehensive database of plant and fungal virus genes and genomes. [Citation Graph (0, 0)][DBLP]
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    RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions. [Citation Graph (0, 0)][DBLP]
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    ShiBASE: an integrated database for comparative genomics of Shigella. [Citation Graph (0, 0)][DBLP]
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    LEGER: knowledge database and visualization tool for comparative genomics of pathogenic and non-pathogenic Listeria species. [Citation Graph (0, 0)][DBLP]
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    Human protein reference database - 2006 update. [Citation Graph (0, 0)][DBLP]
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  91. Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, Coral del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, Jeremy Simpson, Oliver Hofmann, Winston Hide, Karl-Heinz Glatting, Wolfgang Huber, Rainer Pepperkok, Annemarie Poustka, Stefan Wiemann
    The LIFEdb database in 2006. [Citation Graph (0, 0)][DBLP]
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    CryptoDB: a Cryptosporidium bioinformatics resource update. [Citation Graph (0, 0)][DBLP]
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  93. Rex L. Chisholm, Pascale Gaudet, Eric M. Just, Karen E. Pilcher, Petra Fey, Sohel N. Merchant, Warren A. Kibbe
    dictyBase, the model organism database for Dictyostelium discoideum. [Citation Graph (0, 0)][DBLP]
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    TcruziDB: an integrated, post-genomics community resource for Trypanosoma cruzi. [Citation Graph (0, 0)][DBLP]
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  95. David Sherman, Pascal Durrens, Florian Iragne, Emmanuelle Beyne, Macha Nikolski, Jean-Luc Souciet
    Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts. [Citation Graph (0, 0)][DBLP]
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    MPact: the MIPS protein interaction resource on yeast. [Citation Graph (0, 0)][DBLP]
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    Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome. [Citation Graph (0, 0)][DBLP]
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  98. Miguel C. Teixeira, Pedro Monteiro, Pooja Jain, Sandra Tenreiro, Alexandra R. Fernandes, Nuno P. Mira, Marta Alenquer, Ana T. Freitas, Arlindo L. Oliveira, Isabel Sá-Correia
    The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae. [Citation Graph (0, 0)][DBLP]
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    Visualizing syntenic relationships among the hemiascomycetes with the Yeast Gene Order Browser. [Citation Graph (0, 0)][DBLP]
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    FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum. [Citation Graph (0, 0)][DBLP]
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    PHI-base: a new database for pathogen host interactions. [Citation Graph (0, 0)][DBLP]
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    Phytophthora functional genomics database (PFGD): functional genomics of phytophthora-plant interactions. [Citation Graph (0, 0)][DBLP]
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    SGCEdb: a flexible database and web interface integrating experimental results and analysis for structural genomics focusing on Caenorhabditis elegans. [Citation Graph (0, 0)][DBLP]
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    WormBase: better software, richer content. [Citation Graph (0, 0)][DBLP]
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    FLIGHT: database and tools for the integration and cross-correlation of large-scale RNAi phenotypic datasets. [Citation Graph (0, 0)][DBLP]
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  106. Gary Grumbling, Victor Strelets, The FlyBase Consortium
    FlyBase: anatomical data, images and queries. [Citation Graph (0, 0)][DBLP]
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    FlyRNAi: the Drosophila RNAi screening center database. [Citation Graph (0, 0)][DBLP]
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    StellaBase: The Nematostella vectensis Genomics Database. [Citation Graph (0, 0)][DBLP]
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    Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research. [Citation Graph (0, 0)][DBLP]
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    Pathguide: a Pathway Resource List. [Citation Graph (0, 0)][DBLP]
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    LMPD: LIPID MAPS proteome database. [Citation Graph (0, 0)][DBLP]
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    MetaCyc: a multiorganism database of metabolic pathways and enzymes. [Citation Graph (0, 0)][DBLP]
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    The University of Minnesota Biocatalysis/Biodegradation Database: the first decade. [Citation Graph (0, 0)][DBLP]
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    AffinDB: a freely accessible database of affinities for protein-ligand complexes from the PDB. [Citation Graph (0, 0)][DBLP]
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    pSTIING: a "systems" approach towards integrating signalling pathways, interaction and transcriptional regulatory networks in inflammation and cancer. [Citation Graph (0, 0)][DBLP]
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    BioGRID: a general repository for interaction datasets. [Citation Graph (0, 0)][DBLP]
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    EndoNet: an information resource about endocrine networks. [Citation Graph (0, 0)][DBLP]
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    TRANSPATH®: an information resource for storing and visualizing signaling pathways and their pathological aberrations. [Citation Graph (0, 0)][DBLP]
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    Ensembl 2006. [Citation Graph (0, 0)][DBLP]
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    The Mouse Genome Database (MGD): updates and enhancements. [Citation Graph (0, 0)][DBLP]
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    The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. [Citation Graph (0, 0)][DBLP]
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    TreeFam: a curated database of phylogenetic trees of animal gene families. [Citation Graph (0, 0)][DBLP]
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    The Zebrafish Information Network: the zebrafish model organism database. [Citation Graph (0, 0)][DBLP]
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    QTL MatchMaker: a multi-species quantitative trait loci (QTL) database and query system for annotation of genes and QTL. [Citation Graph (0, 0)][DBLP]
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    The UCSC Genome Browser Database: update 2006. [Citation Graph (0, 0)][DBLP]
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    OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI. [Citation Graph (0, 0)][DBLP]
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    HPtaa database-potential target genes for clinical diagnosis and immunotherapy of human carcinoma. [Citation Graph (0, 0)][DBLP]
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    ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis. [Citation Graph (0, 0)][DBLP]
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    SNP500Cancer: a public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genes. [Citation Graph (0, 0)][DBLP]
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    dbPTM: an information repository of protein post-translational modification. [Citation Graph (0, 0)][DBLP]
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    BodyMap-Xs: anatomical breakdown of 17 million animal ESTs for cross-species comparison of gene expression. [Citation Graph (0, 0)][DBLP]
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    CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis. [Citation Graph (0, 0)][DBLP]
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    The International Gene Trap Consortium Website: a portal to all publicly available gene trap cell lines in mouse. [Citation Graph (0, 0)][DBLP]
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    GLIDA: GPCR-ligand database for chemical genomic drug discovery. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:673-677 [Journal]
  143. Mathias Dunkel, Melanie Fullbeck, Stefanie Neumann, Robert Preissner
    SuperNatural: a searchable database of available natural compounds. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:678-683 [Journal]
  144. Filip Pattyn, Piet Robbrecht, Anne De Paepe, Frank Speleman, Jo Vandesompele
    RTPrimerDB: the real-time PCR primer and probe database, major update 2006. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:684-688 [Journal]
  145. Nicolas Le Novère, Benjamin J. Bornstein, Alexander Broicher, Mélanie Courtot, Marco Donizelli, Harish Dharuri, Lu Li, Herbert M. Sauro, Maria J. Schilstra, Bruce E. Shapiro, Jacky L. Snoep, Michael Hucka
    BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:689-691 [Journal]
  146. Liying Cui, Narayanan Veeraraghavan, Alexander Richter, P. Kerr Wall, Robert K. Jansen, James Leebens-Mack, Izabela Makalowska, Claude W. dePamphilis
    ChloroplastDB: the Chloroplast Genome Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:692-696 [Journal]
  147. Emmet A. O'Brien, Yue Zhang, LiuSong Yang, Eric Wang, Veronique Marie, B. Franz Lang, Gertraud Burger
    GOBASE - a database of organelle and bacterial genome information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:697-699 [Journal]
  148. Jochen Kohl, Ingo Paulsen, Thomas Laubach, Achim Radtke, Arndt von Haeseler
    HvrBase++: a phylogenetic database for primate species. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:700-704 [Journal]
  149. H. Prokisch, Christophe Andreoli, U. Ahting, K. Heiss, Andreas Ruepp, C. Scharfe, Thomas Meitinger
    MitoP2: the mitochondrial proteome database - now including mouse data. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:705-711 [Journal]
  150. Davina K. Button, Kevan M. A. Gartland, Leslie D. Ball, Louis Natanson, Jill S. Gartland, Gary D. Lyon
    DRASTIC - INSIGHTS: querying information in a plant gene expression database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:712-716 [Journal]
  151. Pankaj Jaiswal, Junjian Ni, Immanuel Yap, Doreen Ware, William Spooner, Ken Youens-Clark, Liya Ren, Chengzhi Liang, Wei Zhao, Kiran Ratnapu, Benjamin Faga, Payan Canaran, Molly Fogleman, Claire Hebbard, Shuly Avraham, Steven Schmidt, Terry M. Casstevens, Edward S. Buckler, Lincoln Stein, Susan McCouch
    Gramene: a bird's eye view of cereal genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:717-723 [Journal]
  152. Stefanie Hartmann, Dihui Lu, Jason Phillips, Todd J. Vision
    Phytome: a platform for plant comparative genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:724-730 [Journal]
  153. Mayumi Nakano, Kan Nobuta, Kalyan Vemaraju, Shivakundan Singh Tej, Jeremy W. Skogen, Blake C. Meyers
    Plant MPSS databases: signature-based transcriptional resources for analyses of mRNA and small RNA. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:731-735 [Journal]
  154. G. Droc, M. Ruiz, P. Larmande, A. Pereira, P. Piffanelli, J. B. Morel, A. Dievart, B. Courtois, E. Guiderdoni, C. Périn
    OryGenesDB: a database for rice reverse genetics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:736-740 [Journal]
  155. Hajime Ohyanagi, Tsuyoshi Tanaka, Hiroaki Sakai, Yasumasa Shigemoto, Kaori Yamaguchi, Takuya Habara, Yasuyuki Fujii, Baltazar A. Antonio, Yoshiaki Nagamura, Tadashi Imanishi, Kazuho Ikeo, Takeshi Itoh, Takashi Gojobori, Takuji Sasaki
    The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:741-744 [Journal]
  156. Jianwei Zhang, Caishun Li, Changyin Wu, Lizhong Xiong, Guoxing Chen, Qifa Zhang, Shiping Wang
    RMD: a rice mutant database for functional analysis of the rice genome. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:745-748 [Journal]
  157. Max Ingman, Ulf Gyllensten
    mtDB: Human Mitochondrial Genome Database, a resource for population genetics and medical sciences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:749-751 [Journal]
  158. Wei Zhao, Payan Canaran, Rebecca Jurkuta, Theresa Fulton, Jeffrey Glaubitz, Edward S. Buckler, John Doebley, Brandon Gaut, Major Goodman, Jim Holland, Stephen Kresovich, Michael D. McMullen, Lincoln Stein, Doreen Ware
    Panzea: a database and resource for molecular and functional diversity in the maize genome. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:752-757 [Journal]
  159. Jeffry L. Shultz, Deepak Kurunam, Kay Shopinski, M. Javed Iqbal, Samreen Kazi, Kimberley Zobrist, Rabia Bashir, Satsuki Yaegashi, Nagajyothi Lavu, Ahmed J. Afzal, Charles R. Yesudas, M. Abdelmajid Kassem, Chengcang Wu, Hong Bin Zhang, Christopher D. Town, Khalid Meksem, David A. Lightfoot
    The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:758-765 [Journal]
  160. Zhangjun Fei, Xuemei Tang, Rob Alba, James Giovannoni
    Tomato Expression Database (TED): a suite of data presentation and analysis tools. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:766-770 [Journal]
  161. Agnes P. Chan, Geo Pertea, Foo Cheung, Dan Lee, Li Zheng, Cathy Whitelaw, Ana C. Pontaroli, Phillip SanMiguel, Yinan Yuan, Jeffrey Bennetzen, William Brad Barbazuk, John Quackenbush, Pablo D. Rabinowicz
    The TIGR Maize Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:771-776 [Journal]
  162. Avner Schlessinger, Yanay Ofran, Guy Yachdav, Burkhard Rost
    Epitome: database of structure-inferred antigenic epitopes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:777-780 [Journal]
  163. Véronique Giudicelli, Patrice Duroux, Chantal Ginestoux, Géraldine Folch, Joumana Jabado-Michaloud, Denys Chaume, Marie-Paule Lefranc
    IMGT/LIGM-DB, the IMGT® comprehensive database of immunoglobulin and T cell receptor nucleotide sequences. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:781-784 [Journal]
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