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Steven J. M. Jones: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Asim S. Siddiqui, Gordon Robertson, Misha Bilenky, Tamara Astakhova, Obi L. Griffith, Maik Hassel, Keven Lin, Stephen Montgomery, Mehrdad Oveisi, Erin Pleasance, Neil Robertson, Monica C. Sleumer, Kevin Teague, Richard Varhol, Maggie Zhang, Steven J. M. Jones
    cis-Regulatory Element Prediction in Mammalian Genomes. [Citation Graph (0, 0)][DBLP]
    CSB Workshops, 2005, pp:203-206 [Conf]
  2. Babu Sundaram, Barbara M. Chapman, Bernard Li, Mark Mayo, Asim S. Siddiqui, Steven J. M. Jones
    Sun Grid Engine Package for OSCAR - A Google Summer Of Code 2005 Project. [Citation Graph (0, 0)][DBLP]
    HPCS, 2006, pp:41- [Conf]
  3. Byron J. Gao, Obi L. Griffith, Martin Ester, Steven J. M. Jones
    Discovering significant OPSM subspace clusters in massive gene expression data. [Citation Graph (0, 0)][DBLP]
    KDD, 2006, pp:922-928 [Conf]
  4. Sheldon J. McKay, Steven J. M. Jones
    AcePrimer: automation of PCR primer design based on gene structure. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:11, pp:1538-1539 [Journal]
  5. Stephen Montgomery, Obi L. Griffith, Monica C. Sleumer, C. M. Bergman, Misha Bilenky, Erin Pleasance, Y. Prychyna, X. Zhang, Steven J. M. Jones
    ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2006, v:22, n:5, pp:637-640 [Journal]
  6. S. R. Ness, W. Terpstra, Martin Krzywinski, Marco A. Marra, Steven J. M. Jones
    Assembly of fingerprint contigs: parallelized FPC. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2002, v:18, n:3, pp:484-485 [Journal]
  7. René L. Warren, Granger G. Sutton, Steven J. M. Jones, Robert A. Holt
    Assembling millions of short DNA sequences using SSAKE. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:4, pp:500-501 [Journal]
  8. Artem Cherkasov, Steven J. M. Jones
    Structural characterization of genomes by large scale sequence-structure threading. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:37- [Journal]
  9. Artem Cherkasov, Steven J. M. Jones
    An approach to large scale identification of non-obvious structural similarities between proteins. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:61- [Journal]
  10. Artem Cherkasov, Shannan J. Ho Sui, Robert C. Brunham, Steven J. M. Jones
    Structural characterization of genomes by large scale sequence-structure threading: application of reliability analysis in structural genomics. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2004, v:5, n:, pp:101- [Journal]
  11. Peter Ruzanov, Steven J. M. Jones
    An interactive tool for visualization of relationships between gene expression profiles. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2006, v:7, n:, pp:193- [Journal]
  12. Scott D. Zuyderduyn, Steven J. M. Jones
    A knowledge discovery object model API for Java. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2003, v:4, n:, pp:51- [Journal]
  13. Yvonne Y. Li, Steven J. M. Jones, Artem Cherkasov
    Selective Targeting of Indel-inferred Differences in Spatial Structures of Homologous Proteins. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:2, pp:403-414 [Journal]
  14. Artem Cherkasov, Zheng Shi, Yvonne Y. Li, Steven J. M. Jones, Magid Fallahi, Geoffrey L. Hammond
    'Inductive' Charges on Atoms in Proteins: Comparative Docking with the Extended Steroid Benchmark Set and Discovery of a Novel SHBG Ligand. [Citation Graph (0, 0)][DBLP]
    Journal of Chemical Information and Modeling, 2005, v:45, n:6, pp:1842-1853 [Journal]
  15. Gordon Robertson, Misha Bilenky, K. Lin, A. He, W. Yuen, M. Dagpinar, Richard Varhol, Kevin Teague, Obi L. Griffith, X. Zhang, Y. Pan, Maik Hassel, Monica C. Sleumer, W. Pan, Erin Pleasance, M. Chuang, H. Hao, Yvonne Y. Li, Neil Robertson, C. Fjell, B. Li, Stephen Montgomery, Tamara Astakhova, Jianjun Zhou, Jörg Sander, Asim S. Siddiqui, Steven J. M. Jones
    cisRED: a database system for genome-scale computational discovery of regulatory elements. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:68-73 [Journal]
  16. Jörg Sander, Raymond T. Ng, Monica C. Sleumer, Man Saint Yuen, Steven J. M. Jones
    A methodology for analyzing SAGE libraries for cancer profiling. [Citation Graph (0, 0)][DBLP]
    ACM Trans. Inf. Syst., 2005, v:23, n:1, pp:35-60 [Journal]

  17. THOR: targeted high-throughput ortholog reconstructor. [Citation Graph (, )][DBLP]


  18. FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology. [Citation Graph (, )][DBLP]


  19. Slider - maximum use of probability information for alignment of short sequence reads and SNP detection. [Citation Graph (, )][DBLP]


  20. De novo transcriptome assembly with ABySS. [Citation Graph (, )][DBLP]


  21. High quality SNP calling using Illumina data at shallow coverage. [Citation Graph (, )][DBLP]


  22. KiWi: A Scalable Subspace Clustering Algorithm for Gene Expression Analysis [Citation Graph (, )][DBLP]


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