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Gary Benson: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Denise Y. F. Mak, Gary Benson
    All Hits All The Time: Parameter Free Calculation of Seed Sensitivity. [Citation Graph (0, 0)][DBLP]
    APBC, 2007, pp:327-340 [Conf]
  2. Gary Benson
    Tandem Cyclic Alignment. [Citation Graph (0, 0)][DBLP]
    CPM, 2001, pp:118-130 [Conf]
  3. Gary Benson
    A Space Efficient Algorithm for Finding the Best Non-Overlapping Alignment Score. [Citation Graph (0, 0)][DBLP]
    CPM, 1994, pp:1-14 [Conf]
  4. Amihood Amir, Gary Benson
    Efficient Two-Dimensional Compressed Matching. [Citation Graph (0, 0)][DBLP]
    Data Compression Conference, 1992, pp:279-288 [Conf]
  5. Gary Benson
    A new distance measure for comparing sequence profiles based on path lengths along an entropy surface. [Citation Graph (0, 0)][DBLP]
    ECCB, 2002, pp:44-53 [Conf]
  6. Amihood Amir, Gary Benson, Martin Farach
    Optimal Two-Dimensional Compressed Matching. [Citation Graph (0, 0)][DBLP]
    ICALP, 1994, pp:215-226 [Conf]
  7. Panagiotis Papapetrou, Gary Benson, George Kollios
    Discovering Frequent Poly-Regions in DNA Sequences. [Citation Graph (0, 0)][DBLP]
    ICDM Workshops, 2006, pp:94-98 [Conf]
  8. Gary Benson, Lan Dong
    Reconstructing the Duplication History of a Tandem Repeat. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:44-53 [Conf]
  9. Denise Y. F. Mak, Yevgeniy Gelfand, Gary Benson
    Indel seeds for homology search. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2006, pp:341-349 [Conf]
  10. Gary Benson
    Sequence alignment with tandem duplication. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:27-36 [Conf]
  11. Gary Benson
    An algorithm for finding tandem repeats of unspecified pattern size. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:20-29 [Conf]
  12. Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman
    Pooling strategies for establishing physical genome maps using FISH. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1997, pp:294-299 [Conf]
  13. Amihood Amir, Yonatan Aumann, Gary Benson, Avivit Levy, Ohad Lipsky, Ely Porat, Steven Skiena, Uzi Vishne
    Pattern matching with address errors: rearrangement distances. [Citation Graph (0, 0)][DBLP]
    SODA, 2006, pp:1221-1229 [Conf]
  14. Amihood Amir, Gary Benson
    Two-Dimensional Periodicity and Its Applications. [Citation Graph (0, 0)][DBLP]
    SODA, 1992, pp:440-452 [Conf]
  15. Amihood Amir, Gary Benson, Martin Farach
    Let Sleeping Files Lie: Pattern Matching in Z-compressed Files. [Citation Graph (0, 0)][DBLP]
    SODA, 1994, pp:705-714 [Conf]
  16. Amihood Amir, Gary Benson, Martin Farach
    Optimal Parallel Two Dimensional Pattern Matching. [Citation Graph (0, 0)][DBLP]
    SPAA, 1993, pp:79-85 [Conf]
  17. Amihood Amir, Gary Benson, Martin Farach
    Alphabet Independent Two Dimensional Matching [Citation Graph (0, 0)][DBLP]
    STOC, 1992, pp:59-68 [Conf]
  18. Gary Benson
    Composition Alignment. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:447-461 [Conf]
  19. Waibhav Tembe, Nela Zavaljevski, Elizabeth A. Bode, Catherine Chase, Jeanne Geyer, Leonard P. Wasieloski, Gary Benson, Jaques Reifman
    Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:1, pp:5-13 [Journal]
  20. Dina Sokol, Gary Benson, Justin Tojeira
    Tandem repeats over the edit distance. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:2, pp:30-35 [Journal]
  21. Gary Benson
    Tandem cyclic alignment. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 2005, v:146, n:2, pp:124-133 [Journal]
  22. Amihood Amir, Gary Benson, Martin Farach
    Optimal Parallel Two Dimensional Text Searching on a CREW PRAM. [Citation Graph (0, 0)][DBLP]
    Inf. Comput., 1998, v:144, n:1, pp:1-17 [Journal]
  23. Amihood Amir, Gary Benson, Martin Farach
    Optimal Two-Dimensional Compressed Matching. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 1997, v:24, n:2, pp:354-379 [Journal]
  24. Gary Benson, X. Su
    On the Distribution of K-tuple Matches for Sequence Homology: A Constant Time Exact Calculation of the Variance. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:1, pp:87-100 [Journal]
  25. Gary Benson
    Sequence Alignment with Tandem Duplication. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:3, pp:351-368 [Journal]
  26. Fengzhu Sun, Gary Benson, Norman Arnheim, Michael S. Waterman
    Pooling Strategies for Establishing Physical Genome Maps Using FISH. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1997, v:4, n:4, pp:467-486 [Journal]
  27. Amihood Amir, Gary Benson, Martin Farach
    Let Sleeping Files Lie: Pattern Matching in Z-Compressed Files. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 1996, v:52, n:2, pp:299-307 [Journal]
  28. Yevgeniy Gelfand, Alfredo Rodriguez, Gary Benson
    TRDB - The Tandem Repeats Database. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:80-87 [Journal]
  29. Amihood Amir, Gary Benson
    Two-Dimensional Periodicity in Rectangular Arrays. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1998, v:27, n:1, pp:90-106 [Journal]
  30. Amihood Amir, Gary Benson, Martin Farach
    An Alphabet Independent Approach to Two-Dimensional Pattern Matching. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1994, v:23, n:2, pp:313-323 [Journal]
  31. Gary Benson
    A Space Efficient Algorithm for Finding the Best Nonoverlapping Alignment Score. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1995, v:145, n:1&2, pp:357-369 [Journal]

  32. Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems. [Citation Graph (, )][DBLP]


  33. Exact Distribution of a Spaced Seed Statistic for DNA Homology Detection. [Citation Graph (, )][DBLP]


  34. All hits all the time: parameter-free calculation of spaced seed sensitivity. [Citation Graph (, )][DBLP]


  35. 3'-UTR SIRF: A database for identifying clusters of short interspersed repeats in 3' untranslated regions. [Citation Graph (, )][DBLP]


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