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Author:
Kaizhong Zhang: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Jason Tsong-Li Wang, Gung-Wei Chirn, Thomas G. Marr, Bruce A. Shapiro, Dennis Shasha, Kaizhong Zhang
    Combinatorial Pattern Discovery for Scientific Data: Some Preliminary Results. [Citation Graph (13, 23)][DBLP]
    SIGMOD Conference, 1994, pp:115-125 [Conf]
  2. Kaizhong Zhang, Dennis Shasha
    Simple Fast Algorithms for the Editing Distance Between Trees and Related Problems. [Citation Graph (6, 0)][DBLP]
    SIAM J. Comput., 1989, v:18, n:6, pp:1245-1262 [Journal]
  3. Jason Tsong-Li Wang, Kaizhong Zhang, Karpjoo Jeong, Dennis Shasha
    A System for Approximate Tree Matching. [Citation Graph (4, 29)][DBLP]
    IEEE Trans. Knowl. Data Eng., 1994, v:6, n:4, pp:559-571 [Journal]
  4. Dennis Shasha, Kaizhong Zhang
    Fast Algorithms for the Unit Cost Editing Distance Between Trees. [Citation Graph (3, 0)][DBLP]
    J. Algorithms, 1990, v:11, n:4, pp:581-621 [Journal]
  5. Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang
    Approximate Tree Matching in the Presence of Variable Length Don't Cares. [Citation Graph (2, 0)][DBLP]
    J. Algorithms, 1994, v:16, n:1, pp:33-66 [Journal]
  6. Kaizhong Zhang, Dennis Shasha, Jason Tsong-Li Wang
    Fast Serial and Parallel Algorithms for Approximate Tree Matching with VLDC's. [Citation Graph (1, 0)][DBLP]
    CPM, 1992, pp:151-161 [Conf]
  7. Jason Tsong-Li Wang, Dennis Shasha, George Jyh-Shian Chang, Liam Relihan, Kaizhong Zhang, Girish Patel
    Structural Matching and Discovery in Document Databases. [Citation Graph (1, 10)][DBLP]
    SIGMOD Conference, 1997, pp:560-563 [Conf]
  8. Jason Tsong-Li Wang, Kaizhong Zhang, Dennis Shasha
    Pattern Matching and Pattern Discovery in Scientific, Program, and Document Databases. [Citation Graph (1, 2)][DBLP]
    SIGMOD Conference, 1995, pp:487- [Conf]
  9. Kaizhong Zhang, Richard Statman, Dennis Shasha
    On the Editing Distance Between Unordered Labeled Trees. [Citation Graph (1, 0)][DBLP]
    Inf. Process. Lett., 1992, v:42, n:3, pp:133-139 [Journal]
  10. Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles Lajoie
    Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. [Citation Graph (0, 0)][DBLP]
    APBC, 2007, pp:297-306 [Conf]
  11. Mugdha Khaladkar, Vivian Bellofatto, Jason T. L. Wang, Bin Tian, Kaizhong Zhang
    RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research. [Citation Graph (0, 0)][DBLP]
    BIBE, 2006, pp:209-212 [Conf]
  12. Lucian Ilie, Sheng Yu, Kaizhong Zhang
    Repetition Complexity of Words. [Citation Graph (0, 0)][DBLP]
    COCOON, 2002, pp:320-329 [Conf]
  13. Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang
    On the Complexity of Comparing Evolutionary Trees (Extended Abstract). [Citation Graph (0, 0)][DBLP]
    CPM, 1995, pp:177-190 [Conf]
  14. Bin Ma, Zhuozhi Wang, Kaizhong Zhang
    Alignment between Two Multiple Alignments. [Citation Graph (0, 0)][DBLP]
    CPM, 2003, pp:254-265 [Conf]
  15. Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
    The Longest Common Subsequence Problem for Arc-Annotated Sequences. [Citation Graph (0, 0)][DBLP]
    CPM, 2000, pp:154-165 [Conf]
  16. Bin Ma, Kaizhong Zhang
    On the Longest Common Rigid Subsequence Problem. [Citation Graph (0, 0)][DBLP]
    CPM, 2005, pp:11-20 [Conf]
  17. Tao Jiang, Lusheng Wang, Kaizhong Zhang
    Alignment of Trees - An Alternative to Tree Edit. [Citation Graph (0, 0)][DBLP]
    CPM, 1994, pp:75-86 [Conf]
  18. Bin Ma, Kaizhong Zhang, Chengzhi Liang
    An Effective Algorithm for the Peptide De Novo Sequencing from MS/MS Spectrum. [Citation Graph (0, 0)][DBLP]
    CPM, 2003, pp:266-277 [Conf]
  19. Shouwen Tang, Kaizhong Zhang, Xiaolin Wu
    Matching with Matrix Norm Minimization. [Citation Graph (0, 0)][DBLP]
    CPM, 1994, pp:250-258 [Conf]
  20. Zhuozhi Wang, Kaizhong Zhang
    Finding Common RNA Secondary Structures from RNA Sequences. [Citation Graph (0, 0)][DBLP]
    CPM, 1999, pp:258-269 [Conf]
  21. Yanling Yang, Kaizhong Zhang, Xiong Wang, Jason Tsong-Li Wang, Dennis Shasha
    An Approximate Oracle for Distance in Metric Spaces. [Citation Graph (0, 0)][DBLP]
    CPM, 1998, pp:104-117 [Conf]
  22. Kaizhong Zhang
    A New Editing based Distance between Unordered Labeled Trees. [Citation Graph (0, 0)][DBLP]
    CPM, 1993, pp:254-265 [Conf]
  23. Kaizhong Zhang
    Efficient Parallel Algorithms for Tree Editing Problems. [Citation Graph (0, 0)][DBLP]
    CPM, 1996, pp:361-372 [Conf]
  24. Kaizhong Zhang
    Efficient Parallel Algorithm for the Editing Distance between Ordered Trees. [Citation Graph (0, 0)][DBLP]
    CPM, 1998, pp:80-90 [Conf]
  25. Kaizhong Zhang, Lusheng Wang, Bin Ma
    Computing Similarity between RNA Structures. [Citation Graph (0, 0)][DBLP]
    CPM, 1999, pp:281-293 [Conf]
  26. Kaizhong Zhang, Jason Tsong-Li Wang, Dennis Shasha
    On the Editing Distance between Undirected Acyclic Graphs and Related Problems. [Citation Graph (0, 0)][DBLP]
    CPM, 1995, pp:395-407 [Conf]
  27. Yonghua Han, Bin Ma, Kaizhong Zhang
    SPIDER: Software for Protein Identification from Sequence Tags with De Novo Sequencing Error. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:206-215 [Conf]
  28. Shu-Yun Le, Jacob V. Maizel Jr., Kaizhong Zhang
    An Algorithm for Detecting Homologues of Known Structured RNAs in Genomes. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:300-310 [Conf]
  29. Zhuozhi Wang, Kaizhong Zhang
    Multiple RNA Structure Alignment. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:246-254 [Conf]
  30. Xiaolin Wu, Kaizhong Zhang
    A Better Tree-Structured Vector Quantizer. [Citation Graph (0, 0)][DBLP]
    Data Compression Conference, 1991, pp:392-401 [Conf]
  31. Xiaolin Wu, Kaizhong Zhang
    A Subjective Distortion Measure for Vector Quantization. [Citation Graph (0, 0)][DBLP]
    Data Compression Conference, 1994, pp:22-31 [Conf]
  32. Bin Ma, Lieyu Wu, Kaizhong Zhang
    Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science (2), 2005, pp:960-967 [Conf]
  33. Dennis Shasha, Jason Tsong-Li Wang, Kaizhong Zhang, Frank Yeong-Chyang Shih
    Pattern Matching in Unordered Trees. [Citation Graph (0, 0)][DBLP]
    ICTAI, 1992, pp:352-361 [Conf]
  34. Jason Tsong-Li Wang, Kaizhong Zhang, Gung-Wei Chirn
    Approximate Graph Matching Using Probabilistic Hill Climbing Algorithms. [Citation Graph (0, 0)][DBLP]
    ICTAI, 1994, pp:390-396 [Conf]
  35. Lusheng Wang, Kaizhong Zhang
    Space Efficient Algorithms for Ordered Tree Comparison. [Citation Graph (0, 0)][DBLP]
    ISAAC, 2005, pp:380-391 [Conf]
  36. Jason Tsong-Li Wang, Bruce A. Shapiro, Dennis Shasha, Kaizhong Zhang, Chia-Yo Chang
    Automated Discovery of Active Motifs in Multiple RNA Secondary Structures. [Citation Graph (0, 0)][DBLP]
    KDD, 1996, pp:70-75 [Conf]
  37. Jason Tsong-Li Wang, Xiong Wang, King-Ip Lin, Dennis Shasha, Bruce A. Shapiro, Kaizhong Zhang
    Evaluating a Class of Distance-Mapping Algorithms for Data Mining and Clustering. [Citation Graph (0, 0)][DBLP]
    KDD, 1999, pp:307-311 [Conf]
  38. Xiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang
    Automated Discovery of Active Motifs in Three Dimensional Molecules. [Citation Graph (0, 0)][DBLP]
    KDD, 1997, pp:89-95 [Conf]
  39. Andrew Szilard, Sheng Yu, Kaizhong Zhang, Jeffrey Shallit
    Characterizing Regular Languages with Polynomial Densities. [Citation Graph (0, 0)][DBLP]
    MFCS, 1992, pp:494-503 [Conf]
  40. Zhuozhi Wang, Kaizhong Zhang
    Alignment between Two RNA Structures. [Citation Graph (0, 0)][DBLP]
    MFCS, 2001, pp:690-702 [Conf]
  41. Can Alkan, Emre Karakoç, Joseph H. Nadeau, Süleyman Cenk Sahinalp, Kaizhong Zhang
    RNA-RNA Interaction Prediction and Antisense RNA Target Search. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2005, pp:152-171 [Conf]
  42. Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler
    RNA Secondary Structure Prediction Via Energy Density Minimization. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2006, pp:130-142 [Conf]
  43. Guohui Lin, Bin Ma, Kaizhong Zhang
    Edit distance between two RNA structures. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2001, pp:211-220 [Conf]
  44. Lusheng Wang, Kaizhong Zhang, Louxin Zhang
    Perfect phylogenetic networks with recombination. [Citation Graph (0, 0)][DBLP]
    SAC, 2001, pp:46-50 [Conf]
  45. Jason Tsong-Li Wang, Xiong Wang, Dennis Shasha, Bruce A. Shapiro, Kaizhong Zhang, Xinhuan Zheng, Qicheng Ma, Zasha Weinberg
    An Approximate Search Engine for Structural Databases. [Citation Graph (0, 0)][DBLP]
    SIGMOD Conference, 2000, pp:584- [Conf]
  46. Dennis Shasha, Kaizhong Zhang
    Fast Parallel Algorithms for the Unit Cost Editing Distance Between Trees. [Citation Graph (0, 0)][DBLP]
    SPAA, 1989, pp:117-126 [Conf]
  47. Dennis Shasha, Jason Tsong-Li Wang, Huiyuan Shan, Kaizhong Zhang
    ATreeGrep: Approximate Searching in Unordered Trees. [Citation Graph (0, 0)][DBLP]
    SSDBM, 2002, pp:89-98 [Conf]
  48. Yonghua Han, Bin Ma, Kaizhong Zhang
    An Automata Approach to Match Gapped Sequence Tags Against Protein Database. [Citation Graph (0, 0)][DBLP]
    CIAA, 2004, pp:167-177 [Conf]
  49. Shouwen Tang, Kaizhong Zhang, Xiaolin Wu
    Fast Algorithms for Minimum Matrix Norm with Application in Computer Graphics. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1996, v:15, n:1, pp:68-81 [Journal]
  50. Kaizhong Zhang
    A Constrained Edit Distance Between Unordered Labeled Trees. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1996, v:15, n:3, pp:205-222 [Journal]
  51. Bruce A. Shapiro, Kaizhong Zhang
    Comparing multiple RNA secondary structures using tree comparisons. [Citation Graph (0, 0)][DBLP]
    Computer Applications in the Biosciences, 1990, v:6, n:4, pp:309-318 [Journal]
  52. Jotun Hein, Tao Jiang, Lusheng Wang, Kaizhong Zhang
    On the Complexity of Comparing Evolutionary Trees. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1996, v:71, n:1-3, pp:153-169 [Journal]
  53. Shu-Yun Le, Jacob V. Maizel Jr., Kaizhong Zhang
    Finding Conserved Well-Ordered RNA Structures In Genomic Sequences. [Citation Graph (0, 0)][DBLP]
    International Journal of Computational Intelligence and Applications, 2004, v:4, n:4, pp:417-430 [Journal]
  54. Yonghua Han, Bin Ma, Kaizhong Zhang
    An automata approach to match gapped sequence tags against protein database. [Citation Graph (0, 0)][DBLP]
    Int. J. Found. Comput. Sci., 2005, v:16, n:3, pp:487-497 [Journal]
  55. Lucian Ilie, Sheng Yu, Kaizhong Zhang
    Word Complexity And Repetitions In Words. [Citation Graph (0, 0)][DBLP]
    Int. J. Found. Comput. Sci., 2004, v:15, n:1, pp:41-55 [Journal]
  56. Kaizhong Zhang, Jason Tsong-Li Wang, Dennis Shasha
    On the Editing Distance Between Undirected Acyclic Graphs. [Citation Graph (0, 0)][DBLP]
    Int. J. Found. Comput. Sci., 1996, v:7, n:1, pp:43-58 [Journal]
  57. Kaizhong Zhang, Tao Jiang
    Some MAX SNP-Hard Results Concerning Unordered Labeled Trees. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 1994, v:49, n:5, pp:249-254 [Journal]
  58. Gregory D. Collins, Shu-Yun Le, Kaizhong Zhang
    A new algorithm for computing similarity between RNA structures. [Citation Graph (0, 0)][DBLP]
    Inf. Sci., 2001, v:139, n:1-2, pp:59-77 [Journal]
  59. Jason Tsong-Li Wang, Kaizhong Zhang
    Identifying consensus of trees through alignment. [Citation Graph (0, 0)][DBLP]
    Inf. Sci., 2000, v:126, n:1-4, pp:165-189 [Journal]
  60. Jason Tsong-Li Wang, Kaizhong Zhang, Gung-Wei Chirn
    Algorithms for Approximate Graph Matching. [Citation Graph (0, 0)][DBLP]
    Inf. Sci., 1995, v:82, n:1-2, pp:45-74 [Journal]
  61. Jason Tsong-Li Wang, Kaizhong Zhang, Chia-Yo Chang
    Identifying Approximately Common Substructures in Trees Based on a Restricted Edit Distance. [Citation Graph (0, 0)][DBLP]
    Inf. Sci., 1999, v:121, n:3-4, pp:367-386 [Journal]
  62. Yonghua Han, Bin Ma, Kaizhong Zhang
    Spider: Software for Protein Identification from Sequence Tags with de Novo Sequencing Error. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2005, v:3, n:3, pp:697-716 [Journal]
  63. Zhuozhi Wang, Kaizhong Zhang
    Multiple Rna Structure Alignment. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2005, v:3, n:3, pp:609-626 [Journal]
  64. Bin Ma, Lieyu Wu, Kaizhong Zhang
    Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary Structures. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:3, pp:709-720 [Journal]
  65. Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
    A General Edit Distance between RNA Structures. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2002, v:9, n:2, pp:371-388 [Journal]
  66. Lusheng Wang, Kaizhong Zhang, Louxin Zhang
    Perfect Phylogenetic Networks with Recombination. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2001, v:8, n:1, pp:69-78 [Journal]
  67. Bin Ma, Kaizhong Zhang, Chengzhi Liang
    An effective algorithm for peptide de novo sequencing from MS/MS spectra. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2005, v:70, n:3, pp:418-430 [Journal]
  68. Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
    The longest common subsequence problem for arc-annotated sequences. [Citation Graph (0, 0)][DBLP]
    J. Discrete Algorithms, 2004, v:2, n:2, pp:257-270 [Journal]
  69. Xiong Wang, Jason Tsong-Li Wang, King-Ip Lin, Dennis Shasha, Bruce A. Shapiro, Kaizhong Zhang
    An Index Structure for Data Mining and Clustering. [Citation Graph (0, 0)][DBLP]
    Knowl. Inf. Syst., 2000, v:2, n:2, pp:161-184 [Journal]
  70. Jason Tsong-Li Wang, Bruce A. Shapiro, Dennis Shasha, Kaizhong Zhang, Kathleen M. Currey
    An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Pattern Anal. Mach. Intell., 1998, v:20, n:8, pp:889-895 [Journal]
  71. Jason Tsong-Li Wang, Kaizhong Zhang
    Finding similar consensus between trees: an algorithm and a distance hierarchy. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition, 2001, v:34, n:1, pp:127-137 [Journal]
  72. Jason Tsong-Li Wang, Kaizhong Zhang, George Jyh-Shian Chang, Dennis Shasha
    Finding approximate patterns in undirected acyclic graphs. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition, 2002, v:35, n:2, pp:473-483 [Journal]
  73. Kaizhong Zhang
    Algorithms for the constrained editing distance between ordered labeled trees and related problems. [Citation Graph (0, 0)][DBLP]
    Pattern Recognition, 1995, v:28, n:3, pp:463-474 [Journal]
  74. Tao Jiang, Lusheng Wang, Kaizhong Zhang
    Alignment of Trees - An Alternative to Tree Edit. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1995, v:143, n:1, pp:137-148 [Journal]
  75. Bin Ma, Lusheng Wang, Kaizhong Zhang
    Computing similarity between RNA structures. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2002, v:276, n:1-2, pp:111-132 [Journal]
  76. Xiaolin Wu, Kaizhong Zhang
    Quantizer monotonicities and globally optimal scalar quantizer design. [Citation Graph (0, 0)][DBLP]
    IEEE Transactions on Information Theory, 1993, v:39, n:3, pp:1049-0 [Journal]
  77. Xiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang
    Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Knowl. Data Eng., 2002, v:14, n:4, pp:731-749 [Journal]
  78. Dennis Shasha, Jason Tsong-Li Wang, Kaizhong Zhang, Frank Y. Shih
    Exact and approximate algorithms for unordered tree matching. [Citation Graph (0, 0)][DBLP]
    IEEE Transactions on Systems, Man, and Cybernetics, 1994, v:24, n:4, pp:668-678 [Journal]
  79. Jason Tsong-Li Wang, Xiong Wang, Dennis Shasha, Kaizhong Zhang
    MetricMap: an embedding technique for processing distance-based queries in metric spaces. [Citation Graph (0, 0)][DBLP]
    IEEE Transactions on Systems, Man, and Cybernetics, Part B, 2005, v:35, n:5, pp:973-987 [Journal]
  80. Shihyen Chen, Kaizhong Zhang
    An Improved Algorithm for Tree Edit Distance Incorporating Structural Linearity. [Citation Graph (0, 0)][DBLP]
    COCOON, 2007, pp:482-492 [Conf]
  81. Lei Xin, Bin Ma, Kaizhong Zhang
    A New Quartet Approach for Reconstructing Phylogenetic Trees: Quartet Joining Method. [Citation Graph (0, 0)][DBLP]
    COCOON, 2007, pp:40-50 [Conf]
  82. Sriram Chellappan, Wenjun Gu, Xiaole Bai, Dong Xuan, Bin Ma, Kaizhong Zhang
    Deploying Wireless Sensor Networks under Limited Mobility Constraints. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Mob. Comput., 2007, v:6, n:10, pp:1142-1157 [Journal]

  83. Algorithms for Forest Pattern Matching. [Citation Graph (, )][DBLP]


  84. Edge Extraction with Gradient Directions. [Citation Graph (, )][DBLP]


  85. The Normalized Similarity Metric and Its Applications. [Citation Graph (, )][DBLP]


  86. Amino Acid Classification and Hash Seeds for Homology Search. [Citation Graph (, )][DBLP]


  87. Space Efficient Algorithms for Ordered Tree Comparison. [Citation Graph (, )][DBLP]


  88. On the Longest Common Rigid Subsequence Problem. [Citation Graph (, )][DBLP]


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