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Publications of Author

1. Kevin Bryson, Michael Luck, Mike Joy, David T. Jones
   Applying Agents to Bioinformatics in GeneWeaver. [Citation Graph (0, 0)][DBLP]
   CIA, 2000, pp:60-71 [Conf]
   
2. Jaspreet Singh Sodhi, Liam J. McGuffin, Kevin Bryson, Jonathan J. Ward, Lorenz Wernisch, David T. Jones
   Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures. [Citation Graph (0, 0)][DBLP]
   CSB, 2004, pp:702-703 [Conf]
   
3. Jonathan J. Ward, Jaspreet Singh Sodhi, Bernard F. Buxton, David T. Jones
   Predicting Gene Ontology Annotations from Sequence Data Using Kernel-Based Machine Learning Algorithms. [Citation Graph (0, 0)][DBLP]
   CSB, 2004, pp:529-530 [Conf]
   
4. Timothy M. D. Ebbels, Bernard F. Buxton, David T. Jones
   springScape: visualisation of microarray and contextual bioinformatic data using spring embedding and an "information landscape". [Citation Graph (0, 0)][DBLP]
   ISMB (Supplement of Bioinformatics), 2006, pp:99-107 [Conf]
   
5. Kevin Bryson, Michael Luck, Mike Joy, David T. Jones
   Agent Interaction for Bioinformatics Data Management. [Citation Graph (0, 0)][DBLP]
   Applied Artificial Intelligence, 2001, v:15, n:10, pp:917-947 [Journal]
   
6. David T. Jones
   Protein Structure Prediction in Genomics. [Citation Graph (0, 0)][DBLP]
   Briefings in Bioinformatics, 2001, v:2, n:2, pp:111-125 [Journal]
   
7. David P. A. Corney, Bernard F. Buxton, William B. Langdon, David T. Jones
   BioRAT: extracting biological information from full-length papers. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 2004, v:20, n:17, pp:3206-3213 [Journal]
   
8. David T. Jones, William R. Taylor, Janet M. Thornton
   The rapid generation of mutation data matrices from protein sequences. [Citation Graph (0, 0)][DBLP]
   Computer Applications in the Biosciences, 1992, v:8, n:3, pp:275-282 [Journal]
   
9. Pietro Liò, N. Goldman, Jeffrey L. Thorne, David T. Jones
   PASSML: combining evolutionary inference and protein secondary structure prediction. [Citation Graph (0, 0)][DBLP]
   Bioinformatics, 1998, v:14, n:8, pp:726-733 [Journal]
   
10. Liam J. McGuffin, Kevin Bryson, David T. Jones
    The PSIPRED protein structure prediction server. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:4, pp:404-405 [Journal]
    
11. Liam J. McGuffin, Kevin Bryson, David T. Jones
    What are the baselines for protein fold recognition? [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:1, pp:63-72 [Journal]
    
12. Liam J. McGuffin, David T. Jones
    Improvement of the GenTHREADER Method for Genomic Fold Recognition. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:7, pp:874-881 [Journal]
    
13. Liam J. McGuffin, Stefano A. Street, Søren-Aksel Sørensen, David T. Jones
    The Genomic Threading Database. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:1, pp:131-132 [Journal]
    
14. Chris S. Pettitt, Liam J. McGuffin, David T. Jones
    Improving sequence-based fold recognition by using 3D model quality assessment. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:17, pp:3509-3515 [Journal]
    
15. Jonathan J. Ward, Liam J. McGuffin, Kevin Bryson, Bernard F. Buxton, David T. Jones
    The DISOPRED server for the prediction of protein disorder. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:13, pp:2138-2139 [Journal]
    
16. Jonathan J. Ward, Liam J. McGuffin, Bernard F. Buxton, David T. Jones
    Secondary structure prediction with support vector machines. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2003, v:19, n:13, pp:1650-1655 [Journal]
    
17. David T. Jones
    Improving the accuracy of transmembrane protein topology prediction using evolutionary information. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:5, pp:538-544 [Journal]
    
18. Liam J. McGuffin, Stefano A. Street, Kevin Bryson, Søren-Aksel Sørensen, David T. Jones
    The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Database-Issue, pp:196-199 [Journal]
    
19. Kevin Bryson, Liam J. McGuffin, Russell L. Marsden, Jonathan J. Ward, Jaspreet Singh Sodhi, David T. Jones
    Protein structure prediction servers at University College London. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2005, v:33, n:Web-Server-Issue, pp:36-38 [Journal]
    
20. 
    Invited Talk: Docking Protein Domains Using a Contact Map Representation. [Citation Graph (, )][DBLP]
    
    
21. 
    pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination. [Citation Graph (, )][DBLP]
    
    
22. 
    Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction. [Citation Graph (, )][DBLP]
    
    
23. 
    Improving classification in protein structure databases using text mining. [Citation Graph (, )][DBLP]
    
    
24. 
    Transmembrane protein topology prediction using support vector machines. [Citation Graph (, )][DBLP]
    
    
25. 
    Docking protein domains in contact space. [Citation Graph (, )][DBLP]
    
    
26. 
    High throughput profile-profile based fold recognition for the entire human proteome. [Citation Graph (, )][DBLP]
    
    
27. 
    Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods. [Citation Graph (, )][DBLP]