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Srinivas Aluru: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Sudip Seal, Srinivas Aluru
    Communication-aware Parallel Domain Decomposition using Space Filling Curves. [Citation Graph (0, 0)][DBLP]
    ISCA PDCS, 2006, pp:159-164 [Conf]
  2. Zhenhui Shen, Srinivas Aluru, Srikanta Tirthapura
    Indexing for Subscription Covering in Publish-Subscribe Systems. [Citation Graph (0, 0)][DBLP]
    ISCA PDCS, 2005, pp:328-333 [Conf]
  3. Meng-Shiou Wu, Srinivas Aluru, Ricky A. Kendall
    Mixed Mode Matrix Multiplication. [Citation Graph (0, 0)][DBLP]
    CLUSTER, 2002, pp:195-0 [Conf]
  4. Pang Ko, Srinivas Aluru
    Space Efficient Linear Time Construction of Suffix Arrays. [Citation Graph (0, 0)][DBLP]
    CPM, 2003, pp:200-210 [Conf]
  5. Pang Ko, Srinivas Aluru
    Obtaining Provably Good Performance from Suffix Trees in Secondary Storage. [Citation Graph (0, 0)][DBLP]
    CPM, 2006, pp:72-83 [Conf]
  6. Pang Ko, Mahesh Narayanan, Anantharaman Kalyanaraman, Srinivas Aluru
    Space-Conserving Optimal DNA-Protein Alignment . [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:80-88 [Conf]
  7. Benjamin N. Jackson, Srinivas Aluru, Patrick S. Schnable
    Consensus Genetic Maps: A Graph Theoretic Approach. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:35-43 [Conf]
  8. Anantharaman Kalyanaraman, Srinivas Aluru
    Efficient Algorithms and Software for Detection of Full-Length LTR Retrotransposons. [Citation Graph (0, 0)][DBLP]
    CSB, 2005, pp:56-64 [Conf]
  9. Srinivas Aluru, Fatih Erdogan Sevilgen
    Dynamic Compressed Hypertoctrees with Application to the N-Body Problem. [Citation Graph (0, 0)][DBLP]
    FSTTCS, 1999, pp:21-33 [Conf]
  10. Srinivas Aluru, Desh Ranjan, Natsuhiko Futamura
    A Parallel Monte Carlo Algorithm for Protein Accessible Surface Area Computation. [Citation Graph (0, 0)][DBLP]
    HiPC, 1999, pp:339-348 [Conf]
  11. Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang
    Parallel Syntenic Alignments. [Citation Graph (0, 0)][DBLP]
    HiPC, 2002, pp:420-430 [Conf]
  12. Bhanu Hariharan, Srinivas Aluru
    Efficient Parallel Algorithms and Software for Compressed Octrees with Applications to Hierarchical Methods. [Citation Graph (0, 0)][DBLP]
    HiPC, 2001, pp:125-136 [Conf]
  13. Srinivas Aluru
    Properties of Binomial Coefficients and Implications to Parallelizing Lagged Fibonacci Random Number Generators. [Citation Graph (0, 0)][DBLP]
    ICPP (3), 1995, pp:25-28 [Conf]
  14. Anantharaman Kalyanaraman, Srinivas Aluru, Suresh C. Kothari
    Space and Time Efficient Parallel Algorithms and Software for EST Clustering. [Citation Graph (0, 0)][DBLP]
    ICPP, 2002, pp:331-0 [Conf]
  15. Stjepan Rajko, Srinivas Aluru
    Space and Time Optimal Parallel Sequence Alignments. [Citation Graph (0, 0)][DBLP]
    ICPP, 2003, pp:39-47 [Conf]
  16. Srikanta Tirthapura, Sudip Seal, Srinivas Aluru
    A Formal Analysis of Space Filling Curves for Parallel Domain Decomposition. [Citation Graph (0, 0)][DBLP]
    ICPP, 2006, pp:505-512 [Conf]
  17. Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka
    Parallel Construction of Multidimensional Binary Search Trees. [Citation Graph (0, 0)][DBLP]
    International Conference on Supercomputing, 1996, pp:205-212 [Conf]
  18. Srinivas Aluru
    Parallel Additive Lagged Fibonacci Random Number Generators. [Citation Graph (0, 0)][DBLP]
    International Conference on Supercomputing, 1996, pp:102-108 [Conf]
  19. Srinivas Aluru, John L. Gustafson
    A Massively Parallel Optimizer for Expression Evaluation. [Citation Graph (0, 0)][DBLP]
    International Conference on Supercomputing, 1993, pp:97-106 [Conf]
  20. Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra
    Parallel Biological Sequence Comparison Using Prefix Computations. [Citation Graph (0, 0)][DBLP]
    IPPS/SPDP, 1999, pp:653-659 [Conf]
  21. Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka
    Practical Algorithms for Selection on Coarse-Grained Parallel Computers. [Citation Graph (0, 0)][DBLP]
    IPPS, 1996, pp:309-313 [Conf]
  22. David A. Bader, Srinivas Aluru
    Workshop Introduction. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2002, pp:- [Conf]
  23. Anantharaman Kalyanaraman, Srinivas Aluru, Suresh C. Kothari
    Parallel EST Clustering. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2002, pp:- [Conf]
  24. Fatih Erdogan Sevilgen, Natsuhiko Futamura, Srinivas Aluru
    A Provably Optimal, Distribution-Independent Parallel Fast Multipole Method. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2000, pp:77-84 [Conf]
  25. Anantharaman Kalyanaraman, Scott J. Emrich, Patrick S. Schnable, Srinivas Aluru
    Assembling genomes on large-scale parallel computers. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2006, pp:- [Conf]
  26. Srinivas Aluru, Fatih Erdogan Sevilgen
    Efficient Methods for Database Storage and Retrieval Using Space-Filling Curves. [Citation Graph (0, 0)][DBLP]
    ISCIS, 2004, pp:503-512 [Conf]
  27. Srinivas Aluru, John L. Gustafson
    Subtle Issues of SIMD Tree Search. [Citation Graph (0, 0)][DBLP]
    PARCO, 1993, pp:49-56 [Conf]
  28. Meng-Shiou Wu, Ricky A. Kendall, Srinivas Aluru
    A tunable collective communication framework on a cluster of SMPS. [Citation Graph (0, 0)][DBLP]
    Parallel and Distributed Computing and Networks, 2004, pp:56-63 [Conf]
  29. Srinivas Aluru, Songrit Maneewongvatana
    Practical Paralle1 Algorithm for Constructing Line Arrangements. [Citation Graph (0, 0)][DBLP]
    PDPTA, 1996, pp:125-135 [Conf]
  30. Srinivas Aluru, Songrit Maneewongvatana
    A Practical Parallel Algorithm for Line Segment Visibility. [Citation Graph (0, 0)][DBLP]
    PDPTA, 1999, pp:1676-1682 [Conf]
  31. Srinivas Aluru, Gurpur M. Prabhu, John L. Gustafson
    Truly distribution-independent algorithms for the N-body problem. [Citation Graph (0, 0)][DBLP]
    SC, 1994, pp:420-428 [Conf]
  32. Bhanu Hariharan, Srinivas Aluru, Balasubramaniam Shanker
    A scalable parallel fast multipole method for analysis of scattering from perfect electrically conducting surfaces. [Citation Graph (0, 0)][DBLP]
    SC, 2002, pp:1-17 [Conf]
  33. Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman
    M11 - High-performance computing methods for computational genomics. [Citation Graph (0, 0)][DBLP]
    SC, 2006, pp:225- [Conf]
  34. Scott J. Emrich, Srinivas Aluru, Yan Fu, Tsui-Jung Wen, Mahesh Narayanan, Ling Guo, Daniel A. Ashlock, Patrick S. Schnable
    A strategy for assembling the maize (Zea mays L.) genome. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:2, pp:140-147 [Journal]
  35. David A. Bader, Srinivas Aluru
    Special Issue: High Performance Computational Biology. [Citation Graph (0, 0)][DBLP]
    Concurrency - Practice and Experience, 2004, v:16, n:9, pp:817-821 [Journal]
  36. Sudip Seal, Srikanth Komarina, Srinivas Aluru
    An optimal hierarchical clustering algorithm for gene expression data. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 2005, v:93, n:3, pp:143-147 [Journal]
  37. Anantharaman Kalyanaraman, Srinivas Aluru
    Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons. [Citation Graph (0, 0)][DBLP]
    J. Bioinformatics and Computational Biology, 2006, v:4, n:2, pp:197-216 [Journal]
  38. Pang Ko, Srinivas Aluru
    Space efficient linear time construction of suffix arrays. [Citation Graph (0, 0)][DBLP]
    J. Discrete Algorithms, 2005, v:3, n:2-4, pp:143-156 [Journal]
  39. Srinivas Aluru
    Lagged Fibonacci Random Number Generators for Distributed Memory Parallel Computers. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 1997, v:45, n:1, pp:1-12 [Journal]
  40. Srinivas Aluru, David A. Bader
    Guest Editor's Introduction: Special issue on high-performance computational biology. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2003, v:63, n:7-8, pp:671-673 [Journal]
  41. Srinivas Aluru, Natsuhiko Futamura, Kishan Mehrotra
    Parallel biological sequence comparison using prefix computations. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2003, v:63, n:3, pp:264-272 [Journal]
  42. Fatih Erdogan Sevilgen, Srinivas Aluru, Natsuhiko Futamura
    Parallel algorithms for tree accumulations. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2005, v:65, n:1, pp:85-93 [Journal]
  43. Srinivas Aluru, Gurpur M. Prabhu, John L. Gustafson
    A random number generator for parallel computers. [Citation Graph (0, 0)][DBLP]
    Parallel Computing, 1992, v:18, n:8, pp:839-847 [Journal]
  44. Bhanu Hariharan, Srinivas Aluru
    Efficient parallel algorithms and software for compressed octrees with applications to hierarchical methods. [Citation Graph (0, 0)][DBLP]
    Parallel Computing, 2005, v:31, n:3-4, pp:311-331 [Journal]
  45. Natsuhiko Futamura, Srinivas Aluru, Xiaoqiu Huang
    Parallel Syntenic Alignments. [Citation Graph (0, 0)][DBLP]
    Parallel Processing Letters, 2003, v:13, n:4, pp:689-703 [Journal]
  46. Srinivas Aluru, John L. Gustafson, Gurpur M. Prabhu, Fatih Erdogan Sevilgen
    Distribution-Independent Hierarchical Algorithms for the N-body Problem. [Citation Graph (0, 0)][DBLP]
    The Journal of Supercomputing, 1998, v:12, n:4, pp:303-323 [Journal]
  47. Rama Sangireddy, Natsuhiko Futamura, Srinivas Aluru, Arun K. Somani
    Scalable, memory efficient, high-speed IP lookup algorithms. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Netw., 2005, v:13, n:4, pp:802-812 [Journal]
  48. Srinivas Aluru, Nancy M. Amato, David A. Bader
    Editorial: Special Section on High-Performance Computational Biology. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 2006, v:17, n:8, pp:737-739 [Journal]
  49. Ibraheem Al-Furaih, Srinivas Aluru, Sanjay Goil, Sanjay Ranka
    Parallel Construction of Multidimensional Binary Search Trees. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 2000, v:11, n:2, pp:136-148 [Journal]
  50. Ibraheem Al-furiah, Srinivas Aluru, Sanjay Goil, Sanjay Ranka
    Practical Algorithms for Selection on Coarse-Grained Parallel Computers. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 1997, v:8, n:8, pp:813-824 [Journal]
  51. Natsuhiko Futamura, Srinivas Aluru, Desh Ranjan, Bhanu Hariharan
    Efficient Parallel Algorithms for Solvent Accessible Surface Area of Proteins. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 2002, v:13, n:6, pp:544-555 [Journal]
  52. Stjepan Rajko, Srinivas Aluru
    Space and Time Optimal Parallel Sequence Alignments. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 2004, v:15, n:12, pp:1070-1081 [Journal]
  53. Jaroslaw Zola, Xiao Yang, Adrian Rospondek, Srinivas Aluru
    PARALLEL-TCOFFEE: A parallel multiple sequence aligner. [Citation Graph (0, 0)][DBLP]
    ISCA PDCS, 2007, pp:248-253 [Conf]
  54. Scott J. Emrich, Anantharaman Kalyanaraman, Srinivas Aluru
    Massively parallel expressed sequence tag clustering. [Citation Graph (0, 0)][DBLP]
    ISCA PDCS, 2007, pp:254-261 [Conf]
  55. Srinivas Aluru
    The Combinatorics of Sequencing the Corn Genome. [Citation Graph (0, 0)][DBLP]
    COCOON, 2007, pp:1- [Conf]
  56. Srinivas Aluru, David A. Bader, Anantharaman Kalyanaraman
    Symposium Evening Tutorial: High-performance Computing Methods for Computational Genomics. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2007, pp:13- [Conf]
  57. Pang Ko, Srinivas Aluru
    Optimal Self-adjusting Trees for Dynamic String Data in Secondary Storage. [Citation Graph (0, 0)][DBLP]
    SPIRE, 2007, pp:184-194 [Conf]

  58. Parallel Information Theory Based Construction of Gene Regulatory Networks. [Citation Graph (, )][DBLP]


  59. A parallel algorithm for exact Bayesian network inference. [Citation Graph (, )][DBLP]


  60. Tracking Nanostructural Evolution in Alloys: Large-Scale Analysis of Atom Probe Tomography Data on Blue Gene/L. [Citation Graph (, )][DBLP]


  61. Parallel Construction of Bidirected String Graphs for Genome Assembly. [Citation Graph (, )][DBLP]


  62. Constructing Gene Regulatory Networks on Clusters of Cell Processors. [Citation Graph (, )][DBLP]


  63. Fast, Processor-Cardinality Agnostic PRNG with a Tracking Application. [Citation Graph (, )][DBLP]


  64. Parallel biological sequence alignments on the Cell Broadband Engine. [Citation Graph (, )][DBLP]


  65. Parallel accelerated cartesian expansions for particle dynamics simulations. [Citation Graph (, )][DBLP]


  66. Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L. [Citation Graph (, )][DBLP]


  67. Assembly of Large Genomes from Paired Short Reads. [Citation Graph (, )][DBLP]


  68. An Improved Model for Gene Cluster Inference. [Citation Graph (, )][DBLP]


  69. Parallel short sequence assembly of transcriptomes. [Citation Graph (, )][DBLP]


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