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Tandy Warnow: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Ganeshkumar Ganapathy, Tandy Warnow
    Approximating the Complement of the Maximum Compatible Subset of Leaves of k Trees. [Citation Graph (0, 0)][DBLP]
    APPROX, 2002, pp:122-134 [Conf]
  2. Kenneth Rice, Tandy Warnow
    Parsimony is Hard to Beat. [Citation Graph (0, 0)][DBLP]
    COCOON, 1997, pp:124-133 [Conf]
  3. Craig J. Benham, Sampath Kannan, Tandy Warnow
    Of Chicken Teeth and Mouse Eyes, or Generalized Character Compatibility. [Citation Graph (0, 0)][DBLP]
    CPM, 1995, pp:17-26 [Conf]
  4. Leslie Ann Goldberg, Paul W. Goldberg, Cynthia A. Phillips, Elizabeth Sweedyk, Tandy Warnow
    Minimizing Phylogenetic Number to find Good Evolutionary Trees. [Citation Graph (0, 0)][DBLP]
    CPM, 1995, pp:102-127 [Conf]
  5. Cynthia A. Phillips, Tandy Warnow
    The Asymmetric Median Tree - A New model for Building Consensus Trees. [Citation Graph (0, 0)][DBLP]
    CPM, 1996, pp:234-252 [Conf]
  6. Usman Roshan, Bernard M. E. Moret, Tandy Warnow, Tiffani L. Williams
    Rec-I-DCM3: A Fast Algorithmic Technique for Reconstructing Large Phylogenetic Trees. [Citation Graph (0, 0)][DBLP]
    CSB, 2004, pp:98-109 [Conf]
  7. Bernard M. E. Moret, Tandy Warnow
    Reconstructing Optimal Phylogenetic Trees: A Challenge in Experimental Algorithmics. [Citation Graph (0, 0)][DBLP]
    Experimental Algorithmics, 2000, pp:163-180 [Conf]
  8. Sampath Kannan, Tandy Warnow
    Inferring Evolutionary History from DNA Sequences (Extended Abstract) [Citation Graph (0, 0)][DBLP]
    FOCS, 1990, pp:362-371 [Conf]
  9. Hans L. Bodlaender, Michael R. Fellows, Tandy Warnow
    Two Strikes Against Perfect Phylogeny. [Citation Graph (0, 0)][DBLP]
    ICALP, 1992, pp:273-283 [Conf]
  10. Péter L. Erdös, Mike A. Steel, László A. Székely, Tandy Warnow
    Constructing Big Trees from Short Sequences. [Citation Graph (0, 0)][DBLP]
    ICALP, 1997, pp:827-837 [Conf]
  11. Bernard M. E. Moret, David A. Bader, Tandy Warnow
    High-Performance Algorithm Engineering for Computational Phylogenetics. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science (2), 2001, pp:1012-1021 [Conf]
  12. Mary E. Cosner, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Li-San Wang, Tandy Warnow, Stacia K. Wyman
    A New Fast Heuristic for Computing the Breakpoint Phylogeny and Experimental Phylogenetic Analyses of Real and Synthetic Data. [Citation Graph (0, 0)][DBLP]
    ISMB, 2000, pp:104-115 [Conf]
  13. Daniel H. Huson, Lisa Vawter, Tandy Warnow
    Solving Large Scale Phylogenetic Problems using DCM2. [Citation Graph (0, 0)][DBLP]
    ISMB, 1999, pp:118-129 [Conf]
  14. Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
    Designing fast converging phylogenetic methods. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:190-198 [Conf]
  15. Bernard M. E. Moret, Li-San Wang, Tandy Warnow, Stacia K. Wyman
    New approaches for reconstructing phylogenies from gene order data. [Citation Graph (0, 0)][DBLP]
    ISMB (Supplement of Bioinformatics), 2001, pp:165-173 [Conf]
  16. Cara Stockham, Li-San Wang, Tandy Warnow
    Statistically based postprocessing of phylogenetic analysis by clustering. [Citation Graph (0, 0)][DBLP]
    ISMB, 2002, pp:285-293 [Conf]
  17. Bernard M. E. Moret, Stacia K. Wyman, David A. Bader, Tandy Warnow, Mi Yan
    A New Implmentation and Detailed Study of Breakpoint Analysis. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2001, pp:583-594 [Conf]
  18. Luay Nakhleh, Bernard M. E. Moret, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
    The Accuracy of Fast Phylogenetic Methods for Large Datasets. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:211-222 [Conf]
  19. Luay Nakhleh, Jerry Sun, Tandy Warnow, C. Randal Linder, Bernard M. E. Moret, Anna Tholse
    Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2003, pp:315-326 [Conf]
  20. Li-San Wang, Robert K. Jansen, Bernard M. E. Moret, Linda A. Raubeson, Tandy Warnow
    Fast Phylogenetic Methods for the Analysis of Genome Rearrangement Data: An Empirical Study. [Citation Graph (0, 0)][DBLP]
    Pacific Symposium on Biocomputing, 2002, pp:524-535 [Conf]
  21. Maria Luisa Bonet, Mike A. Steel, Tandy Warnow, Shibu Yooseph
    Better methods for solving parsimony and compatibility. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1998, pp:40-49 [Conf]
  22. Daniel H. Huson, Scott Nettles, Tandy Warnow
    Obtaining highly accurate topology estimates of evolutionary trees from very short sequences. [Citation Graph (0, 0)][DBLP]
    RECOMB, 1999, pp:198-207 [Conf]
  23. Luay Nakhleh, Tandy Warnow, C. Randal Linder
    Reconstructing reticulate evolution in species: theory and practice. [Citation Graph (0, 0)][DBLP]
    RECOMB, 2004, pp:337-346 [Conf]
  24. Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy Warnow
    On contract-and-refine transformations between phylogenetic trees. [Citation Graph (0, 0)][DBLP]
    SODA, 2004, pp:900-909 [Conf]
  25. Monika Rauch Henzinger, Valerie King, Tandy Warnow
    Constructing a Tree from Homeomorphic Subtrees, with Applications to Computational Evolutionary Biology. [Citation Graph (0, 0)][DBLP]
    SODA, 1996, pp:333-340 [Conf]
  26. Katherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter
    Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. [Citation Graph (0, 0)][DBLP]
    SODA, 2001, pp:196-205 [Conf]
  27. Sampath Kannan, Eugene L. Lawler, Tandy Warnow
    Determining the Evolutionary Tree. [Citation Graph (0, 0)][DBLP]
    SODA, 1990, pp:475-484 [Conf]
  28. Sampath Kannan, Tandy Warnow
    Triangulating Three-Colored Graphs. [Citation Graph (0, 0)][DBLP]
    SODA, 1991, pp:337-343 [Conf]
  29. Sampath Kannan, Tandy Warnow
    A Fast Algorithm for the Computation and Enumeration of Perfect Phylogenies when the Number of Character States is Fixed. [Citation Graph (0, 0)][DBLP]
    SODA, 1995, pp:595-603 [Conf]
  30. Sampath Kannan, Tandy Warnow, Shibu Yooseph
    Computing the Local Consensus of Trees. [Citation Graph (0, 0)][DBLP]
    SODA, 1995, pp:68-77 [Conf]
  31. Fred R. McMorris, Tandy Warnow, Thomas Wimer
    Triangulating Vertex Colored Graphs. [Citation Graph (0, 0)][DBLP]
    SODA, 1993, pp:120-127 [Conf]
  32. Tandy Warnow
    Tree Compatibility and Inferring Evoluationary History. [Citation Graph (0, 0)][DBLP]
    SODA, 1993, pp:382-391 [Conf]
  33. Tandy Warnow, Bernard M. E. Moret, Katherine St. John
    Absolute convergence: true trees from short sequences. [Citation Graph (0, 0)][DBLP]
    SODA, 2001, pp:186-195 [Conf]
  34. Tandy Warnow, Donald Ringe, Ann Taylor
    Reconstructing the Evolutionary History of Natural Languages. [Citation Graph (0, 0)][DBLP]
    SODA, 1996, pp:314-322 [Conf]
  35. Maria Luisa Bonet, Cynthia A. Phillips, Tandy Warnow, Shibu Yooseph
    Constructing Evolutionary Trees in the Presence of Polymorphic Characters. [Citation Graph (0, 0)][DBLP]
    STOC, 1996, pp:220-229 [Conf]
  36. Martin Farach, Sampath Kannan, Tandy Warnow
    A robust model for finding optimal evolutionary trees. [Citation Graph (0, 0)][DBLP]
    STOC, 1993, pp:137-145 [Conf]
  37. Li-San Wang, Tandy Warnow
    Estimating true evolutionary distances between genomes. [Citation Graph (0, 0)][DBLP]
    STOC, 2001, pp:637-646 [Conf]
  38. Ganeshkumar Ganapathysaravanabavan, Tandy Warnow
    Finding a Maximum Compatible Tree for a Bounded Number of Trees with Bounded Degree Is Solvable in Polynomial Time. [Citation Graph (0, 0)][DBLP]
    WABI, 2001, pp:156-163 [Conf]
  39. Ganeshkumar Ganapathy, Barbara Goodson, Robert K. Jansen, Vijaya Ramachandran, Tandy Warnow
    Pattern Identification in Biogeography. [Citation Graph (0, 0)][DBLP]
    WABI, 2005, pp:116-127 [Conf]
  40. Ganeshkumar Ganapathy, Vijaya Ramachandran, Tandy Warnow
    Better Hill-Climbing Searches for Parsimony. [Citation Graph (0, 0)][DBLP]
    WABI, 2003, pp:245-258 [Conf]
  41. Bernard M. E. Moret, Usman Roshan, Tandy Warnow
    Sequence-Length Requirements for Phylogenetic Methods. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:343-356 [Conf]
  42. Luay Nakhleh, Usman Roshan, Katherine St. John, Jerry Sun, Tandy Warnow
    The Performance of Phylogenetic Methods on Trees of Bounded Diameter. [Citation Graph (0, 0)][DBLP]
    WABI, 2001, pp:214-226 [Conf]
  43. Luay Nakhleh, Usman Roshan, Lisa Vawter, Tandy Warnow
    Estimating the Deviation from a Molecular Clock. [Citation Graph (0, 0)][DBLP]
    WABI, 2002, pp:287-299 [Conf]
  44. Sampath Kannan, Tandy Warnow
    Tree Reconstruction from Partial Orders. [Citation Graph (0, 0)][DBLP]
    WADS, 1993, pp:397-408 [Conf]
  45. Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy Warnow, Shibu Yooseph
    Hybrid Tree Reconstruction Methods. [Citation Graph (0, 0)][DBLP]
    Algorithm Engineering, 1998, pp:179-192 [Conf]
  46. Daniel H. Huson, Kelly Ann Smith, Tandy Warnow
    Estimating Large Distances in Phylogenetic Reconstruction. [Citation Graph (0, 0)][DBLP]
    Algorithm Engineering, 1999, pp:272-286 [Conf]
  47. Martin Farach, Sampath Kannan, Tandy Warnow
    A Robust Model for Finding Optimal Evolutionary Trees. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1995, v:13, n:1/2, pp:155-179 [Journal]
  48. Monika Rauch Henzinger, Valerie King, Tandy Warnow
    Constructing a Tree from Homeomorphic Subtrees, with Applications to Computational Evolutionary Biology. [Citation Graph (0, 0)][DBLP]
    Algorithmica, 1999, v:24, n:1, pp:1-13 [Journal]
  49. Péter L. Erdös, Mike A. Steel, László A. Székely, Tandy Warnow
    Local Quartet Splits of a Binary Tree Infer All Quartet Splits Via One Dyadic Inference Rule. [Citation Graph (0, 0)][DBLP]
    Computers and Artificial Intelligence, 1997, v:16, n:2, pp:- [Journal]
  50. Bernard M. E. Moret, Li-San Wang, Tandy Warnow
    Toward New Software for Computational Phylogenetics. [Citation Graph (0, 0)][DBLP]
    IEEE Computer, 2002, v:35, n:7, pp:55-64 [Journal]
  51. Leslie Ann Goldberg, Paul W. Goldberg, Cynthia A. Phillips, Elizabeth Sweedyk, Tandy Warnow
    Minimizing Phylogenetic Number To Find Good Evolutionary Trees. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1996, v:71, n:1-3, pp:111-136 [Journal]
  52. Cynthia A. Phillips, Tandy Warnow
    The Asymmetric Median Tree - A New Model for Building Consensus Trees. [Citation Graph (0, 0)][DBLP]
    Discrete Applied Mathematics, 1996, v:71, n:1-3, pp:311-335 [Journal]
  53. Mike A. Steel, Tandy Warnow
    Kaikoura Tree Theorems: Computing the Maximum Agreement Subtree. [Citation Graph (0, 0)][DBLP]
    Inf. Process. Lett., 1993, v:48, n:2, pp:77-82 [Journal]
  54. Sampath Kannan, Eugene L. Lawler, Tandy Warnow
    Determining the Evolutionary Tree Using Experiments. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 1996, v:21, n:1, pp:26-50 [Journal]
  55. Katherine St. John, Tandy Warnow, Bernard M. E. Moret, Lisa Vawter
    Performance study of phylogenetic methods: (unweighted) quartet methods and neighbor-joining. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 2003, v:48, n:1, pp:173-193 [Journal]
  56. Tandy Warnow
    Tree Compatibility and Inferring Evolutionary History. [Citation Graph (0, 0)][DBLP]
    J. Algorithms, 1994, v:16, n:3, pp:388-407 [Journal]
  57. Maria Luisa Bonet, Mike A. Steel, Tandy Warnow, Shibu Yooseph
    Better Methods for Solving Parsimony and Compatibility. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1998, v:5, n:3, pp:391-408 [Journal]
  58. Craig J. Benham, Sampath Kannan, Michael Paterson, Tandy Warnow
    Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1995, v:2, n:4, pp:515-525 [Journal]
  59. Daniel H. Huson, Scott Nettles, Tandy Warnow
    Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 1999, v:6, n:3/4, pp:- [Journal]
  60. Luay Nakhleh, Tandy Warnow, C. Randal Linder, Katherine St. John
    Reconstructing Reticulate Evolution in SpeciesTheory and Practice. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2005, v:12, n:6, pp:796-811 [Journal]
  61. Bernard M. E. Moret, Jijun Tang, Li-San Wang, Tandy Warnow
    Steps toward accurate reconstructions of phylogenies from gene-order data. [Citation Graph (0, 0)][DBLP]
    J. Comput. Syst. Sci., 2002, v:65, n:3, pp:508-525 [Journal]
  62. Daniel H. Huson, Scott Nettles, Kenneth Rice, Tandy Warnow, Shibu Yooseph
    Hybrid Tree Reconstruction Methods. [Citation Graph (0, 0)][DBLP]
    ACM Journal of Experimental Algorithms, 1999, v:4, n:, pp:5- [Journal]
  63. Péter L. Erdös, Michael Anthony Steel, László A. Székely, Tandy Warnow
    A few logs suffice to build (almost) all trees (I). [Citation Graph (0, 0)][DBLP]
    Random Struct. Algorithms, 1999, v:14, n:2, pp:153-184 [Journal]
  64. Maria Luisa Bonet, Cynthia A. Phillips, Tandy Warnow, Shibu Yooseph
    Constructing Evolutionary Trees in the Presence of Polymorphic Characters. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1999, v:29, n:1, pp:103-131 [Journal]
  65. Sampath Kannan, Tandy Warnow
    Inferring Evolutionary History from DNA Sequences. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1994, v:23, n:4, pp:713-737 [Journal]
  66. Sampath Kannan, Tandy Warnow
    Tree Reconstruction from Partial Orders. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1995, v:24, n:3, pp:511-519 [Journal]
  67. Sampath Kannan, Tandy Warnow
    A Fast Algorithm for the Computation and Enumeration of Perfect Phylogenies. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1997, v:26, n:6, pp:1749-1763 [Journal]
  68. Sampath Kannan, Tandy Warnow
    Computing the Local Consensus of Trees. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 1998, v:27, n:6, pp:1695-1724 [Journal]
  69. Sampath Kannan, Tandy Warnow
    Triangulating 3-Colored Graphs. [Citation Graph (0, 0)][DBLP]
    SIAM J. Discrete Math., 1992, v:5, n:2, pp:249-258 [Journal]
  70. Fred R. McMorris, Tandy Warnow, Thomas Wimer
    Triangulating Vertex-Colored Graphs. [Citation Graph (0, 0)][DBLP]
    SIAM J. Discrete Math., 1994, v:7, n:2, pp:296-306 [Journal]
  71. Steven N. Evans, Tandy Warnow
    Unidentifiable Divergence Times in Rates-across-Sites Models. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2004, v:1, n:3, pp:130-134 [Journal]
  72. Bernard M. E. Moret, Luay Nakhleh, Tandy Warnow, C. Randal Linder, Anna Tholse, Anneke Padolina, Jerry Sun, Ruth E. Timme
    Phylogenetic Networks: Modeling, Reconstructibility, and Accuracy. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2004, v:1, n:1, pp:13-23 [Journal]
  73. Ganeshkumar Ganapathy, Barbara Goodson, Robert K. Jansen, Hai-son Le, Vijaya Ramachandran, Tandy Warnow
    Pattern Identification in Biogeography. [Citation Graph (0, 0)][DBLP]
    IEEE/ACM Trans. Comput. Biology Bioinform., 2006, v:3, n:4, pp:334-346 [Journal]
  74. Hans L. Bodlaender, Michael R. Fellows, Michael T. Hallett, Todd Wareham, Tandy Warnow
    The hardness of perfect phylogeny, feasible register assignment and other problems on thin colored graphs. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2000, v:244, n:1-2, pp:167-188 [Journal]
  75. Péter L. Erdös, Michael Anthony Steel, László A. Székely, Tandy Warnow
    A Few Logs Suffice to Build (almost) All Trees: Part II. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 1999, v:221, n:1-2, pp:77-118 [Journal]
  76. Tandy Warnow, Binhai Zhu
    Preface. [Citation Graph (0, 0)][DBLP]
    Theor. Comput. Sci., 2004, v:325, n:3, pp:345-346 [Journal]
  77. Bernard M. E. Moret, David A. Bader, Tandy Warnow
    High-Performance Algorithm Engineering for Computational Phylogenetics. [Citation Graph (0, 0)][DBLP]
    The Journal of Supercomputing, 2002, v:22, n:1, pp:99-111 [Journal]
  78. Li-San Wang, Tandy Warnow
    Reconstructing Chromosomal Evolution. [Citation Graph (0, 0)][DBLP]
    SIAM J. Comput., 2006, v:36, n:1, pp:99-131 [Journal]

  79. Session Introduction. [Citation Graph (, )][DBLP]


  80. The Effect of the Guide Tree on Multiple Sequence Alignments and Subsequent Phylogenetic Analysis. [Citation Graph (, )][DBLP]


  81. A Simulation Study Comparing Supertree and Combined Analysis Methods Using SMIDGen. [Citation Graph (, )][DBLP]


  82. An Experimental Study of Quartets MaxCut and Other Supertree Methods. [Citation Graph (, )][DBLP]


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