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Publications of Author

1. Michael Brudno, Sanket Malde, Alexander Poliakov, Chuong B. Do, Olivier Couronne, Inna Dubchak, Serafim Batzoglou
   Glocal alignment: finding rearrangements during alignment. [Citation Graph (0, 0)][DBLP]
   ISMB (Supplement of Bioinformatics), 2003, pp:54-62 [Conf]
   
2. Inna Dubchak, Stephen R. Holbrook, Sung-Hou Kim
   Comparison of Two Variations of Neural Network Approaches to the Prediction of Protein Folding Pattern. [Citation Graph (0, 0)][DBLP]
   ISMB, 1993, pp:118-126 [Conf]
   
3. Inna Dubchak, Ilya B. Muchnik, Sung-Hou Kim
   Protein Folding Class Predictor for SCOP: Approach Based on Global Descriptors. [Citation Graph (0, 0)][DBLP]
   ISMB, 1997, pp:104-107 [Conf]
   
4. Victor M. Markowitz, Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavrommatis, Victor Kunin, Hector Garcia Martin, Inna Dubchak, Philip Hugenholtz, Nikos Kyrpides
   An experimental metagenome data management and analysis system. [Citation Graph (0, 0)][DBLP]
   ISMB (Supplement of Bioinformatics), 2006, pp:359-367 [Conf]
   
5. Eddy Mayoraz, Inna Dubchak, Ilya B. Muchnik
   Relation Between Protein Structure, Sequence Homology and Composition of Amino Acids. [Citation Graph (0, 0)][DBLP]
   ISMB, 1995, pp:240-248 [Conf]
   
6. Poe Xing, Casimir A. Kulikowski, Ilya B. Muchnik, Inna Dubchak, Denise M. Wolf, Sylvia Spengler, Manfred Zorn
   Analysis of Ribosomal RNA Sequences by Combinatorial Clustering. [Citation Graph (0, 0)][DBLP]
   ISMB, 1999, pp:287-296 [Conf]
   
7. Inna Dubchak, Lior Pachter, Liping Wei
   Genome-Wide Analysis and Comparative Genomics - Session Introduction. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2002, pp:112-114 [Conf]
   
8. Liping Wei, Inna Dubchak, Victor V. Solovyev
   Genome-wide Analysis and Comparative Genomics - Session Introduction. [Citation Graph (0, 0)][DBLP]
   Pacific Symposium on Biocomputing, 2003, pp:276-278 [Conf]
   
9. Inna Dubchak, Lior Pachter
   The computational challenges of applying comparative-based computational methods to whole genomes. [Citation Graph (0, 0)][DBLP]
   Briefings in Bioinformatics, 2002, v:3, n:1, pp:18-22 [Journal]
   
10. Chris H. Q. Ding, Inna Dubchak
    Multi-class protein fold recognition using support vector machines and neural networks. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2001, v:17, n:4, pp:349-358 [Journal]
    
11. Chris Mayor, Michael Brudno, Jody R. Schwartz, Alexander Poliakov, Edward M. Rubin, Kelly A. Frazer, Lior Pachter, Inna Dubchak
    VISTA : visualizing global DNA sequence alignments of arbitrary length. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2000, v:16, n:11, pp:1046-1047 [Journal]
    
12. Nameeta Shah, Olivier Couronne, Len A. Pennacchio, Michael Brudno, Serafim Batzoglou, E. Wes Bethel, Edward M. Rubin, Bernd Hamann, Inna Dubchak
    Phylo-VISTA: interactive visualization of multiple DNA sequence alignments. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2004, v:20, n:5, pp:636-643 [Journal]
    
13. Shengyin Gu, Iain Anderson, Victor Kunin, Michael J. Cipriano, Simon Minovitsky, Gunther H. Weber, Nina Amenta, Bernd Hamann, Inna Dubchak
    TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2007, v:23, n:6, pp:764-766 [Journal]
    
14. Nameeta Shah, Michael V. Teplitsky, Simon Minovitsky, Len A. Pennacchio, Philip Hugenholtz, Bernd Hamann, Inna Dubchak
    SNP-VISTA: An interactive SNP visualization tool. [Citation Graph (0, 0)][DBLP]
    BMC Bioinformatics, 2005, v:6, n:, pp:292- [Journal]
    
15. Liping Wei, Yueyi Liu, Inna Dubchak, John Shon, John Park
    Comparative genomics approaches to study organism similarities and differences. [Citation Graph (0, 0)][DBLP]
    Journal of Biomedical Informatics, 2002, v:35, n:2, pp:142-150 [Journal]
    
16. I. Saira Mian, Inna Dubchak
    Representing and Reasoning about Protein Families Using Generative and Discriminative Methods. [Citation Graph (0, 0)][DBLP]
    Journal of Computational Biology, 2000, v:7, n:6, pp:849-862 [Journal]
    
17. I. Dralyuk, Michael Brudno, Mikhail S. Gelfand, Manfred Zorn, Inna Dubchak
    ASDB: database of alternatively spliced genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2000, v:28, n:1, pp:296-297 [Journal]
    
18. Kelly A. Frazer, Lior Pachter, Alexander Poliakov, Edward M. Rubin, Inna Dubchak
    VISTA: computational tools for comparative genomics. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:273-279 [Journal]
    
19. Mikhail S. Gelfand, Inna Dubchak, I. Dralyuk, Manfred Zorn
    ASDB: database of alternatively spliced genes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 1999, v:27, n:1, pp:301-302 [Journal]
    
20. Victor M. Markowitz, Frank Korzeniewski, Krishna Palaniappan, Ernest Szeto, Greg Werner, Anu Padki, Xueling Zhao, Inna Dubchak, Philip Hugenholtz, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides
    The integrated microbial genomes (IMG) system. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2006, v:34, n:Database-Issue, pp:344-348 [Journal]
    
21. Alexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam Arkin, Andrey A. Mironov, Mikhail S. Gelfand, Inna Dubchak
    RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:407-412 [Journal]
    
22. Axel Visel, Simon Minovitsky, Inna Dubchak, Len A. Pennacchio
    VISTA Enhancer Browser - a database of tissue-specific human enhancers. [Citation Graph (0, 0)][DBLP]
    Nucleic Acids Research, 2007, v:35, n:Database-Issue, pp:88-92 [Journal]