Journals in DBLP
Aditi Kanhere , Manju Bansal A novel method for prokaryotic promoter prediction based on DNA stability. [Citation Graph (0, 0)][DBLP ] Journal ] David A. Rasko , Garry S. A. Myers , Jacques Ravel Visualization of comparative genomic analyses by BLAST score ratio. [Citation Graph (0, 0)][DBLP ] Journal ] Les Dethlefsen , Thomas M. Schmidt Differences in codon bias cannot explain differences in translational power among microbes. [Citation Graph (0, 0)][DBLP ] Journal ] Jean-Christophe Gelly , Laurent Chiche , Jérôme Gracy EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments. [Citation Graph (0, 0)][DBLP ] Journal ] Marko Srdanovic , Ulf Schenk , Michael Schwieger , Fabien Campagne Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases. [Citation Graph (0, 0)][DBLP ] Journal ] Dave Bridges , Marie E. Fraser , Greg B. G. Moorhead Cyclic nucleotide binding proteins in the Arabidopsis thaliana and Oryza sativa genomes. [Citation Graph (0, 0)][DBLP ] Journal ] Pantelis G. Bagos , Theodore Liakopoulos , Stavros J. Hamodrakas Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. [Citation Graph (0, 0)][DBLP ] Journal ] Dongxiao Zhu , Zhaohui S. Qin Structural comparison of metabolic networks in selected single cell organisms. [Citation Graph (0, 0)][DBLP ] Journal ] David A. Nix , Michael B. Eisen GATA: a graphic alignment tool for comparative sequence analysis. [Citation Graph (0, 0)][DBLP ] Journal ] Helene H. Thygesen , Aeilko H. Zwinderman Modelling the correlation between the activities of adjacent genes in drosophila. [Citation Graph (0, 0)][DBLP ] Journal ] Thomas MacCarthy , Andrew Pomiankowski , Robert Seymour Using large-scale perturbations in gene network reconstruction. [Citation Graph (0, 0)][DBLP ] Journal ] Ran Rubinstein , Itamar Simon MILANO - custom annotation of microarray results using automatic literature searches. [Citation Graph (0, 0)][DBLP ] Journal ] Francisco Azuaje , Haiying Wang , Alban Chesneau Non-linear mapping for exploratory data analysis in functional genomics. [Citation Graph (0, 0)][DBLP ] Journal ] Deli Wang , Jian Huang , Hehuang Xie , Liliana Manzella , Marcelo Bento Soares A robust two-way semi-linear model for normalization of cDNA microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Antje Krause , Jens Stoye , Martin Vingron Large scale hierarchical clustering of protein sequences. [Citation Graph (0, 0)][DBLP ] Journal ] William H. Majoros , Mihaela Pertea , Arthur L. Delcher , Steven Salzberg Efficient decoding algorithms for generalized hidden Markov model gene finders. [Citation Graph (0, 0)][DBLP ] Journal ] Don Simone Daly , Amanda M. White , Susan M. Varnum , Kevin K. Anderson , Richard C. Zangar Evaluating concentration estimation errors in ELISA microarray experiments. [Citation Graph (0, 0)][DBLP ] Journal ] Rifat A. Hamoudi , Amina El-Hamidi , Ming-Qing Du Identification of novel prognostic markers in cervical intraepithelial neoplasia using LDMAS (LOH Data Management and Analysis Software). [Citation Graph (0, 0)][DBLP ] Journal ] Vilmos Ágoston , Masa Cemazar , László Kaján , Sándor Pongor Graph-representation of oxidative folding pathways. [Citation Graph (0, 0)][DBLP ] Journal ] Pengyu Hong , Wing Hung Wong GeneNotes - A novel information management software for biologists. [Citation Graph (0, 0)][DBLP ] Journal ] John L. Moreland , Apostol Gramada , Oleksandr V. Buzko , Qing Zhang , Philip E. Bourne The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications. [Citation Graph (0, 0)][DBLP ] Journal ] Maria Novatchkova , Andreas Bachmair , Birgit Eisenhaber , Frank Eisenhaber Proteins with two SUMO-like domains in chromatin-associated complexes: The RENi (Rad60-Esc2-NIP45) family. [Citation Graph (0, 0)][DBLP ] Journal ] Joe Whitney , David J. Esteban , Chris Upton Recent Hits Acquired by BLAST (ReHAB): A tool to identify new hits in sequence similarity searches. [Citation Graph (0, 0)][DBLP ] Journal ] Victor Kunin , Christos A. Ouzounis Clustering the annotation space of proteins. [Citation Graph (0, 0)][DBLP ] Journal ] Sylvain Foissac , Thomas Schiex Integrating alternative splicing detection into gene prediction. [Citation Graph (0, 0)][DBLP ] Journal ] Kerby Shedden , Wei Chen , Rork Kuick , Debashis Ghosh , James W. MacDonald , Kathleen R. Cho , Thomas J. Giordano , Stephen B. Gruber , Eric R. Fearon , Jeremy M. G. Taylor , Samir Hanash Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data. [Citation Graph (0, 0)][DBLP ] Journal ] Franck Picard , Stéphane Robin , Marc Lavielle , Christian Vaisse , Jean-Jacques Daudin A statistical approach for array CGH data analysis. [Citation Graph (0, 0)][DBLP ] Journal ] Yingdong Zhao , Ming-Chung Li , Richard Simon An adaptive method for cDNA microarray normalization. [Citation Graph (0, 0)][DBLP ] Journal ] Harold J. Drabkin , Christopher Hollenbeck , David P. Hill , Judith A. Blake Ontological visualization of protein-protein interactions. [Citation Graph (0, 0)][DBLP ] Journal ] Alena Shmygelska , Holger H. Hoos An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem. [Citation Graph (0, 0)][DBLP ] Journal ] Guy St. C. Slater , Ewan Birney Automated generation of heuristics for biological sequence comparison. [Citation Graph (0, 0)][DBLP ] Journal ] James A. Koziol , Anne C. Feng A note on generalized Genome Scan Meta-Analysis statistics. [Citation Graph (0, 0)][DBLP ] Journal ] Shandar Ahmad , Akinori Sarai PSSM-based prediction of DNA binding sites in proteins. [Citation Graph (0, 0)][DBLP ] Journal ] Sohrab P. Shah , Yong Huang , Tao Xu , Macaire M. S. Yuen , John Ling , B. F. Francis Ouellette Atlas - a data warehouse for integrative bioinformatics. [Citation Graph (0, 0)][DBLP ] Journal ] Markus Neuhäuser , Tanja Boes , Karl-Heinz Jöckel Two-part permutation tests for DNA methylation and microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Robert G. Beiko , Robert L. Charlebois GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA. [Citation Graph (0, 0)][DBLP ] Journal ] Keyue Ding , Jing Zhang , Kaixin Zhou , Yan Shen , Xuegong Zhang htSNPer1.0: software for haplotype block partition and htSNPs selection. [Citation Graph (0, 0)][DBLP ] Journal ] Ruth Dunn , Frank Dudbridge , Christopher M. Sanderson The Use of Edge-Betweenness Clustering to Investigate Biological Function in Protein Interaction Networks. [Citation Graph (0, 0)][DBLP ] Journal ] Itay Tirosh , Naama Barkai Computational verification of protein-protein interactions by orthologous co-expression. [Citation Graph (0, 0)][DBLP ] Journal ] Florent Angly , Beltran Rodriguez-Brito , David Bangor , Pat McNairnie , Mya Breitbart , Peter Salamon , Ben Felts , James Nulton , Joseph Mahaffy , Forest Rohwer PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. [Citation Graph (0, 0)][DBLP ] Journal ] Koji Kadota , Ryutaro Fukumura , Joseph J. Rodrigue , Ryoko Araki , Masumi Abe A normalization strategy applied to HiCEP (an AFLP-based expression profiling) analysis: Toward the strict alignment of valid fragments across electrophoretic patterns. [Citation Graph (0, 0)][DBLP ] Journal ] Wen-Chieh Chang , Chang-Wei Li , Bor-Sen Chen Quantitative inference of dynamic regulatory pathways via microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] John Colbourne , Vasanth R. Singan , Don G. Gilbert wFleaBase: the Daphnia genome database. [Citation Graph (0, 0)][DBLP ] Journal ] Noam Kaplan , Michal Linial Automatic detection of false annotations via binary property clustering. [Citation Graph (0, 0)][DBLP ] Journal ] Guangjie Feng , Nick Burton , Bill Hill , Duncan Davidson , Janet Kerwin , Mark Scott , Susan Lindsay , Richard A. Baldock JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases. [Citation Graph (0, 0)][DBLP ] Journal ] Roderic D. M. Page A Taxonomic Search Engine: Federating taxonomic databases using web services. [Citation Graph (0, 0)][DBLP ] Journal ] Olivier Bastien , Philippe Ortet , Sylvaine Roy , Eric Maréchal A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities. [Citation Graph (0, 0)][DBLP ] Journal ] Eva Freyhult , Peteris Prusis , Maris Lapinsh , Jarl E. S. Wikberg , Vincent Moulton , Mats G. Gustafsson Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling. [Citation Graph (0, 0)][DBLP ] Journal ] Blaise T. F. Alako , Antoine Veldhoven , Sjozef van Baal , Rob Jelier , Stefan Verhoeven , Ton Rullmann , Jan Polman , Guido Jenster CoPub Mapper: mining MEDLINE based on search term co-publication. [Citation Graph (0, 0)][DBLP ] Journal ] Siv Midtun Hollup , Gisle Sælensminde , Nathalie Reuter WEBnm@: a web application for normal mode analyses of proteins. [Citation Graph (0, 0)][DBLP ] Journal ] Jaime E. Blair , Prachi Shah , S. Blair Hedges Evolutionary sequence analysis of complete eukaryote genomes. [Citation Graph (0, 0)][DBLP ] Journal ] Harri Lähdesmäki , Ilya Shmulevich , Valerie Dunmire , Olli Yli-Harja , Wei Zhang In silico microdissection of microarray data from heterogeneous cell populations.Citation Graph (0, 0)][DBLP ] Journal ] Euan A. Adie , Richard R. Adams , Kathryn L. Evans , David J. Porteous , Ben S. Pickard Speeding disease gene discovery by sequence based candidate prioritization. [Citation Graph (0, 0)][DBLP ] Journal ] Andrew G. Garrow , Alison Agnew , David R. Westhead TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins. [Citation Graph (0, 0)][DBLP ] Journal ] John R. Stevens , R. W. Doerge Combining Affymetrix microarray results. [Citation Graph (0, 0)][DBLP ] Journal ] Zheng Guo , Tianwen Zhang , Xia Li , Qi Wang , Jianzhen Xu , Hui Yu , Jing Zhu , Haiyun Wang , Chenguang Wang , Eric J. Topol , Qing Wang , Shaoqi Rao Towards precise classification of cancers based on robust gene functional expression profiles. [Citation Graph (0, 0)][DBLP ] Journal ] Gajendra P. S. Raghava , Joon H. Han Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein. [Citation Graph (0, 0)][DBLP ] Journal ] Lin Wang , Simin Liu , Tianhua Niu , Xin Xu SNPHunter: a bioinformatic software for single nucleotide polymorphism data acquisition and management. [Citation Graph (0, 0)][DBLP ] Journal ] Yadhu Kumar , Ralf Westram , Sebastian Behrens , Bernhard Fuchs , Frank Oliver Glöckner , Rudolf Amann , Harald Meier , Wolfgang Ludwig Graphical representation of ribosomal RNA probe accessibility data using ARB software package. [Citation Graph (0, 0)][DBLP ] Journal ] Alexey Larionov , Andreas Krause , William Miller A standard curve based method for relative real time PCR data processing. [Citation Graph (0, 0)][DBLP ] Journal ] Elena Rivas Evolutionary models for insertions and deletions in a probabilistic modeling framework. [Citation Graph (0, 0)][DBLP ] Journal ] James J. Cai , David K. Smith , Xuhua Xia , Kwok-yung Yuen MBEToolbox: a Matlab toolbox for sequence data analysis in molecular biology and evolution. [Citation Graph (0, 0)][DBLP ] Journal ] Mayte Suárez-Fariñas , Asifa Haider , Knut M. Wittkowski "Harshlighting" small blemishes on microarrays. [Citation Graph (0, 0)][DBLP ] Journal ] Amarendran R. Subramanian , Jan Weyer-Menkhoff , Michael Kaufmann , Burkhard Morgenstern DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment. [Citation Graph (0, 0)][DBLP ] Journal ] Li M. Fu , Casey S. Fu-Liu Evaluation of gene importance in microarray data based upon probability of selection. [Citation Graph (0, 0)][DBLP ] Journal ] Ilya Levner Feature selection and nearest centroid classification for protein mass spectrometry. [Citation Graph (0, 0)][DBLP ] Journal ] Francis Tang , Ching Lian Chua , Liang-Yoong Ho , Yun-Ping Lim , Praveen Issac , Arun Krishnan Wildfire: distributed, Grid-enabled workflow construction and execution. [Citation Graph (0, 0)][DBLP ] Journal ] C. Titus Brown , Yuan Xie 0003 , Eric H. Davidson , R. Andrew Cameron Paircomp, FamilyRelationsII and Cartwheel: tools for interspecific sequence comparison. [Citation Graph (0, 0)][DBLP ] Journal ] Hartmut Scheel , Kay Hofmann Prediction of a common structural scaffold for proteasome lid, COP9-signalosome and eIF3 complexes. [Citation Graph (0, 0)][DBLP ] Journal ] S. A. Kirov , X. Peng , E. Baker , D. Schmoyer , B. Zhang , J. Snoddy GeneKeyDB: A lightweight, gene-centric, relational database to support data mining environments. [Citation Graph (0, 0)][DBLP ] Journal ] Ian Holmes Accelerated probabilistic inference of RNA structure evolution. [Citation Graph (0, 0)][DBLP ] Journal ] Aba-Sah Dadzie , Albert Burger Providing visualisation support for the analysis of anatomy ontology data. [Citation Graph (0, 0)][DBLP ] Journal ] Brian P. Suomela , Miguel A. Andrade Ranking the whole MEDLINE database according to a large training set using text indexing. [Citation Graph (0, 0)][DBLP ] Journal ] Xiaoxing Liu , Arun Krishnan , Adrian Mondry An Entropy-based gene selection method for cancer classification using microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Ya Zhang , John-Marc Chandonia , Chris H. Q. Ding , Stephen R. Holbrook Comparative mapping of sequence-based and structure-based protein domains. [Citation Graph (0, 0)][DBLP ] Journal ] Chris D. Bajdik , Byron Kuo , Shawn Rusaw , Steven Jones , Angela Brooks-Wilson CGMIM: Automated text-mining of Online Mendelian Inheritance in Man (OMIM) to identify genetically-associated cancers and candidate genes. [Citation Graph (0, 0)][DBLP ] Journal ] Voichita D. Marinescu , Isaac S. Kohane , Alberto Riva MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes. [Citation Graph (0, 0)][DBLP ] Journal ] Alexander Ploner , Lance D. Miller , Per Hall , Jonas Bergh , Yudi Pawitan Correlation test to assess low-level processing of high-density oligonucleotide microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Silke Trißl , Kristian Rother , Heiko Müller , Thomas Steinke , Ina Koch , Robert Preissner , Cornelius Frömmel , Ulf Leser Columba: an integrated database of proteins, structures, and annotations. [Citation Graph (0, 0)][DBLP ] Journal ] Igor V. Tetko , Axel Facius , Andreas Ruepp , Hans-Werner Mewes Super paramagnetic clustering of protein sequences. [Citation Graph (0, 0)][DBLP ] Journal ] Gerton Lunter , István Miklós , Alexei Drummond , Jens Ledet Jensen , Jotun Hein Bayesian coestimation of phylogeny and sequence alignment. [Citation Graph (0, 0)][DBLP ] Journal ] Markus T. Friberg , Peter von Rohr , Gaston H. Gonnet Scoring functions for transcription factor binding site prediction. [Citation Graph (0, 0)][DBLP ] Journal ] Wei Chen , Fikret Erdogan , H.-Hilger Ropers , Steffen Lenzner , Reinhard Ullmann CGHPRO - A comprehensive data analysis tool for array CGH. [Citation Graph (0, 0)][DBLP ] Journal ] Prinal Trivedi , Jode W. Edwards , Jelai Wang , Gary L. Gadbury , Vinodh Srinivasasainagendra , Stanislav O. Zakharkin , Kyoungmi Kim , Tapan Mehta , Jacob P. L. Brand , Amit Patki , Grier P. Page , David B. Allison HDBStat!: A platform-independent software suite for statistical analysis of high dimensional biology data. [Citation Graph (0, 0)][DBLP ] Journal ] Lei Shi , Fabien Campagne Building a protein name dictionary from full text: a machine learning term extraction approach. [Citation Graph (0, 0)][DBLP ] Journal ] Jianghui Liu , Jason Tsong-Li Wang , Jun Hu , Bin Tian A method for aligning RNA secondary structures and its application to RNA motif detection. [Citation Graph (0, 0)][DBLP ] Journal ] Mark J. Gibbs , John S. Armstrong , Adrian J. Gibbs Individual sequences in large sets of gene sequences may be distinguished efficiently by combinations of shared sub-sequences. [Citation Graph (0, 0)][DBLP ] Journal ] Andreas Möglich , Daniel Weinfurtner , Till Maurer , Wolfram Gronwald , Hans Robert Kalbitzer A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles. [Citation Graph (0, 0)][DBLP ] Journal ] Le Sy Vinh , Arndt von Haeseler Shortest triplet clustering: reconstructing large phylogenies using representative sets. [Citation Graph (0, 0)][DBLP ] Journal ] Scot E. Dowd , Joaquin Zaragoza , Javier R. Rodriguez , Melvin J. Oliver , Paxton R. Payton Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST). [Citation Graph (0, 0)][DBLP ] Journal ] Judith E. Stenger , Hong Xu , Carol Haynes , Elizabeth R. Hauser , Margaret A. Pericak-Vance , Pascal J. Goldschmidt-Clermont , Jeffery M. Vance Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser. [Citation Graph (0, 0)][DBLP ] Journal ] Jeffrey P. Mower PREP-Mt: predictive RNA editor for plant mitochondrial genes. [Citation Graph (0, 0)][DBLP ] Journal ] Leslie Grate Many accurate small-discriminatory feature subsets exist in microarray transcript data: biomarker discovery. [Citation Graph (0, 0)][DBLP ] Journal ] Michael Watson ProGenExpress: Visualization of quantitative data on prokaryotic genomes. [Citation Graph (0, 0)][DBLP ] Journal ] Markus Wistrand , Erik L. L. Sonnhammer Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER. [Citation Graph (0, 0)][DBLP ] Journal ] Ashwini Patil , Haruki Nakamura Filtering high-throughput protein-protein interaction data using a combination of genomic features. [Citation Graph (0, 0)][DBLP ] Journal ] Michael Maurer , Robert Molidor , Alexander Sturn , Jürgen Hartler , Hubert Hackl , Gernot Stocker , Andreas Prokesch , Marcel Scheideler , Zlatko Trajanoski MARS: Microarray analysis, retrieval, and storage system. [Citation Graph (0, 0)][DBLP ] Journal ] Michael S. Rosenberg Evolutionary distance estimation and fidelity of pair wise sequence alignment. [Citation Graph (0, 0)][DBLP ] Journal ] Aaron M. Cohen , William R. Hersh , Christopher Dubay , Kent A. Spackman Using co-occurrence network structure to extract synonymous gene and protein names from MEDLINE abstracts. [Citation Graph (0, 0)][DBLP ] Journal ] Nikolaos G. Sgourakis , Pantelis G. Bagos , Panagiotis K. Papasaikas , Stavros J. Hamodrakas A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models. [Citation Graph (0, 0)][DBLP ] Journal ] Kshitiz Gupta , Dina Thomas , S. V. Vidya , K. V. Venkatesh , S. Ramakumar Detailed protein sequence alignment based on Spectral Similarity Score (SSS). [Citation Graph (0, 0)][DBLP ] Journal ] Hua Liu , Sergey Tarima , Aaron S. Borders , Thomas V. Getchell , Marilyn L. Getchell , Arnold J. Stromberg Quadratic regression analysis for gene discovery and pattern recognition for non-cyclic short time-course microarray experiments. [Citation Graph (0, 0)][DBLP ] Journal ] Scott L. Carter , Aron C. Eklund , Brigham H. Mecham , Isaac S. Kohane , Zoltan Szallasi Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. [Citation Graph (0, 0)][DBLP ] Journal ] Erik L. L. Sonnhammer , Volker Hollich Scoredist : A simple and robust protein sequence distance estimator.Citation Graph (0, 0)][DBLP ] Journal ] Irina I. Abnizova , Rene te Boekhorst , Klaudia Walter , Walter R. Gilks Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome: the fluffy-tail test. [Citation Graph (0, 0)][DBLP ] Journal ] Davide Corà , Carl Herrmann , Christoph Dieterich , Ferdinando Di Cunto , Paolo Provero , Michele Caselle Ab initio identification of putative human transcription factor binding sites by comparative genomics. [Citation Graph (0, 0)][DBLP ] Journal ] Jeff Reneker , Chi-Ren Shyu Refined repetitive sequence searches utilizing a fast hash function and cross species information retrievals. [Citation Graph (0, 0)][DBLP ] Journal ] Andreas Hahn , Jörg Rahnenführer , Priti Talwar , Thomas Lengauer Confirmation of human protein interaction data by human expression data. [Citation Graph (0, 0)][DBLP ] Journal ] Daniel Shegogue , W. Jim Zheng Integration of the Gene Ontology into an object-oriented architecture. [Citation Graph (0, 0)][DBLP ] Journal ] Jianhua Ruan , Weixiong Zhang CAGER: classification analysis of gene expression regulation using multiple information sources. [Citation Graph (0, 0)][DBLP ] Journal ] Matthew A. Hibbs , Nathaniel C. Dirksen , Kai Li , Olga G. Troyanskaya Visualization methods for statistical analysis of microarray clusters. [Citation Graph (0, 0)][DBLP ] Journal ] David La , Dennis R. Livesay Predicting functional sites with an automated algorithm suitable for heterogeneous datasets. [Citation Graph (0, 0)][DBLP ] Journal ] Miika Ahdesmäki , Harri Lähdesmäki , Ronald K. Pearson , Heikki Huttunen , Olli Yli-Harja Robust detection of periodic time series measured from biological systems. [Citation Graph (0, 0)][DBLP ] Journal ] André Lambert , Matthieu Legendre , Jean-Fred Fontaine , Daniel Gautheret Computing expectation values for RNA motifs using discrete convolutions. [Citation Graph (0, 0)][DBLP ] Journal ] Nan Lin , Hongyu Zhao Are scale-free networks robust to measurement errors? [Citation Graph (0, 0)][DBLP ] Journal ] Xing Qiu , Andrew I. Brooks , Lev Klebanov , Andrei Yakovlev The effects of normalization on the correlation structure of microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Stefania Bortoluzzi , Alessandro Coppe , Andrea Bisognin , Cinzia Pizzi , Gian Antonio Danieli A multistep bioinformatic approach detects putative regulatory elements in gene promoters. [Citation Graph (0, 0)][DBLP ] Journal ] Elke Michalsky , Mathias Dunkel , Andrean Goede , Robert Preissner SuperLigands - a database of ligand structures derived from the Protein Data Bank. [Citation Graph (0, 0)][DBLP ] Journal ] Bernhard Haubold , Nora Pierstorff , Friedrich Möller , Thomas Wiehe Genome comparison without alignment using shortest unique substrings. [Citation Graph (0, 0)][DBLP ] Journal ] Shugo Hamahashi , Shuichi Onami , Hiroaki Kitano Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking. [Citation Graph (0, 0)][DBLP ] Journal ] Mythily Ganapathi , Pragya Srivastava , Sushanta Kumar Das Sutar , Kaushal Kumar , Dipayan Dasgupta , Gajinder Pal Singh , Vani Brahmachari , Samir K. Brahmachari Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes. [Citation Graph (0, 0)][DBLP ] Journal ] Roald Rossnes , Ingvar Eidhammer , David A. Liberles Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data. [Citation Graph (0, 0)][DBLP ] Journal ] Pingzhao Hu , Celia M. T. Greenwood , Joseph Beyene Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models. [Citation Graph (0, 0)][DBLP ] Journal ] Ola Larsson , Claes Wahlestedt , James A. Timmons Considerations when using the significance analysis of microarrays (SAM) algorithm. [Citation Graph (0, 0)][DBLP ] Journal ] Matthew J. Wakefield , Peter Maxwell , Gavin A. Huttley Vestige: Maximum likelihood phylogenetic footprinting. [Citation Graph (0, 0)][DBLP ] Journal ] Eduardo Eyras , Alexandre Reymond , Robert Castelo , Jacqueline M. Bye , Francisco Camara , Paul Flicek , Elizabeth J. Huckle , Genis Parra , David D. Shteynberg , Carine Wyss , Jane Rogers , Stylianos E. Antonarakis , Ewan Birney , Roderic Guigó , Michael R. Brent Gene finding in the chicken genome. [Citation Graph (0, 0)][DBLP ] Journal ] Björn Peters , Alessandro Sette Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method. [Citation Graph (0, 0)][DBLP ] Journal ] Mark L. Crowe SeqDoC: rapid SNP and mutation detection by direct comparison of DNA sequence chromatograms. [Citation Graph (0, 0)][DBLP ] Journal ] Adrian Schneider , Gina Cannarozzi , Gaston H. Gonnet Empirical codon substitution matrix. [Citation Graph (0, 0)][DBLP ] Journal ] Roland Schwarz , Patrick Musch , Axel von Kamp , Bernd Engels , R. Heiner Schirmer , Stefan Schuster , Thomas Dandekar YANA - a software tool for analyzing flux modes, gene-expression and enzyme activities. [Citation Graph (0, 0)][DBLP ] Journal ] Taijiao Jiang , Amy E. Keating AVID: An integrative framework for discovering functional relationships among proteins. [Citation Graph (0, 0)][DBLP ] Journal ] Xiang Gao , Kent Vander Velden , Daniel F. Voytas , Xun Gu SplitTester : software to identify domains responsible for functional divergence in protein family.Citation Graph (0, 0)][DBLP ] Journal ] Davin Butt , Andrew J. Roger , Christian Blouin libcov: A C++ bioinformatic library to manipulate protein structures, sequence alignments and phylogeny. [Citation Graph (0, 0)][DBLP ] Journal ] Lutz Hamel , Olga Zhaxybayeva , J. Peter Gogarten PentaPlot: A software tool for the illustration of genome mosaicism. [Citation Graph (0, 0)][DBLP ] Journal ] Matthew J. Cockerill BMC Bioinformatics comes of age. [Citation Graph (0, 0)][DBLP ] Journal ] Peter Murray-Rust , John B. O. Mitchell , Henry S. Rzepa Chemistry in Bioinformatics. [Citation Graph (0, 0)][DBLP ] Journal ] Barend Mons Which gene did you mean? [Citation Graph (0, 0)][DBLP ] Journal ] James W. Cooper , Aaron Kershenbaum Discovery of protein-protein interactions using a combination of linguistic, statistical and graphical information. [Citation Graph (0, 0)][DBLP ] Journal ] Seon-Young Kim , David J. Volsky PAGE: Parametric Analysis of Gene Set Enrichment. [Citation Graph (0, 0)][DBLP ] Journal ] Perseus I. Missirlis , Carri-Lyn R. Mead , Stefanie L. Butland , B. F. Francis Ouellette , Rebecca S. Devon , Blair R. Leavitt , Robert A. Holt Satellog: A database for the identification and prioritization of satellite repeats in disease association studies. [Citation Graph (0, 0)][DBLP ] Journal ] Chad L. Myers , Xing Chen , Olga G. Troyanskaya Visualization-based discovery and analysis of genomic aberrations in microarray data. [Citation Graph (0, 0)][DBLP ] Journal ] Stephen E. Diener , Thomas D. Houfek , Sam E. Kalat , D. E. Windham , Mark Burke , Charles Opperman , Ralph A. Dean Alkahest NuclearBLAST: a user-friendly BLAST management and analysis system. [Citation Graph (0, 0)][DBLP ] Journal ] Thanyaluk Jirapech-Umpai , J. Stuart Aitken Feature selection and classification for microarray data analysis: Evolutionary methods for identifying predictive genes. [Citation Graph (0, 0)][DBLP ] Journal ] Bob J. A. Schijvenaars , Barend Mons , Marc Weeber , Martijn J. Schuemie , Erik M. van Mulligen , Hester M. Wain , Jan A. Kors Thesaurus-based disambiguation of gene symbols. [Citation Graph (0, 0)][DBLP ] Journal ] Christelle Hennequet-Antier , Hélène Chiapello , Karine Piot , Séverine Degrelle , Isabelle Hue , Jean-Paul Renard , François Rodolphe , Stéphane Robin AnovArray: a set of SAS macros for the analysis of variance of gene expression data. [Citation Graph (0, 0)][DBLP ] Journal ] Liisa B. Koski , Michael W. Gray , B. Franz Lang , Gertraud Burger AutoFACT: An Auto matic F unctional A nnotation and C lassification T ool. [Citation Graph (0, 0)][DBLP ] Journal ] Deepak Sarda , Gek Huey Chua , Kuo-Bin Li , Arun Krishnan pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties. [Citation Graph (0, 0)][DBLP ] Journal ] Janina Reeder , Peter Steffen , Robert Giegerich Effective ambiguity checking in biosequence analysis. [Citation Graph (0, 0)][DBLP ] Journal ] David J. Reiss , Iliana Avila-Campillo , Vesteinn Thorsson , Benno Schwikowski , Timothy Galitski Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection. [Citation Graph (0, 0)][DBLP ] Journal ] Kapil G. Gadkar , Rudiyanto Gunawan , Francis J. Doyle III Iterative approach to model identification of biological networks. [Citation Graph (0, 0)][DBLP ] Journal ] Olaf R. P. Bininda-Emonds transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences. [Citation Graph (0, 0)][DBLP ] Journal ] Tapio Pahikkala , Filip Ginter , Jorma Boberg , Jouni Järvinen , Tapio Salakoski Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation. [Citation Graph (0, 0)][DBLP ] Journal ] Per Stenberg , Fredrik Pettersson , Anja O. Saura , Anders Berglund , Jan Larsson Sequence signature analysis of chromosome identity in three Drosophila species. 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