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Bertil Schmidt: [Publications] [Author Rank by year] [Co-authors] [Prefers] [Cites] [Cited by]

Publications of Author

  1. Jacop Yanto, Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell
    Biological Sequence Analysis with Hidden Markov Models on an FPGA. [Citation Graph (0, 0)][DBLP]
    Asia-Pacific Computer Systems Architecture Conference, 2005, pp:429-439 [Conf]
  2. Chunxi Chen, Bertil Schmidt
    Performance analysis of computational biology applications on hierarchical Grid systems. [Citation Graph (0, 0)][DBLP]
    CCGRID, 2004, pp:426-433 [Conf]
  3. Chunxi Chen, Bertil Schmidt
    Computing Large-Scale Alignments on a Multi-Cluster. [Citation Graph (0, 0)][DBLP]
    CLUSTER, 2003, pp:38-45 [Conf]
  4. Weiguo Liu, Bertil Schmidt
    Parallel Design Pattern for Computational Biology and Scientific Computing Applications. [Citation Graph (0, 0)][DBLP]
    CLUSTER, 2003, pp:456-459 [Conf]
  5. Udo Mahlmeister, Bertil Schmidt, Gerald Sommer
    Preattentive Colour Features by Steerable Filters. [Citation Graph (0, 0)][DBLP]
    DAGM-Symposium, 1995, pp:464-472 [Conf]
  6. Ishfaq Ahmad, Pieter Jonker, Bertil Schmidt, Andreas Uhl
    Topic Introduction. [Citation Graph (0, 0)][DBLP]
    Euro-Par, 2003, pp:850- [Conf]
  7. Chunxi Chen, Bertil Schmidt
    Parallel Construction of Large Suffix Trees on a PC Cluster. [Citation Graph (0, 0)][DBLP]
    Euro-Par, 2005, pp:1227-1236 [Conf]
  8. Weiguo Liu, Bertil Schmidt
    A Generic Parallel Pattern-Based System for Bioinformatics. [Citation Graph (0, 0)][DBLP]
    Euro-Par, 2004, pp:989-996 [Conf]
  9. Bertil Schmidt
    Design of a Parallel Accelerator for Volume Rendering. [Citation Graph (0, 0)][DBLP]
    Euro-Par, 2000, pp:1095-1104 [Conf]
  10. Bertil Schmidt, Manfred Schimmler
    A Parallel Accelerator Architecture for Multimedia Video Compression. [Citation Graph (0, 0)][DBLP]
    Euro-Par, 1999, pp:950-960 [Conf]
  11. Bertil Schmidt, Heiko Schröder, Manfred Schimmler
    Scanning Biosequence Databases on a Hybrid Parallel Architecture. [Citation Graph (0, 0)][DBLP]
    Euro-Par, 2001, pp:360-370 [Conf]
  12. Bertil Schmidt, Manfred Schimmler, Heiko Schröder
    Morphological Hough Transform on the Instruction Systolic Array. [Citation Graph (0, 0)][DBLP]
    Euro-Par, 1997, pp:798-806 [Conf]
  13. Bertil Schmidt, Manfred Schimmler, Heiko Schröder
    Long Operand Arithmetic on Instruction Systolic Computer Architectures and Its Application in RSA Cryptography. [Citation Graph (0, 0)][DBLP]
    Euro-Par, 1998, pp:916-922 [Conf]
  14. Menaka Rajapakse, Bertil Schmidt, Vladimir Brusic
    Multi-Objective Evolutionary Algorithm for Discovering Peptide Binding Motifs. [Citation Graph (0, 0)][DBLP]
    EvoWorkshops, 2006, pp:149-158 [Conf]
  15. Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell
    Hyper customized processors for bio-sequence database scanning on FPGAs. [Citation Graph (0, 0)][DBLP]
    FPGA, 2005, pp:229-237 [Conf]
  16. Chunxi Chen, Bertil Schmidt
    Load Balancing for Hierarchical Grid Computing: A Case Study. [Citation Graph (0, 0)][DBLP]
    HiPC, 2004, pp:353-362 [Conf]
  17. Weiguo Liu, Bertil Schmidt
    A Tunable Coarse-Grained Parallel Algorithm for Irregular Dynamic Programming Applications. [Citation Graph (0, 0)][DBLP]
    HiPC, 2004, pp:91-100 [Conf]
  18. Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig
    GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment. [Citation Graph (0, 0)][DBLP]
    HiPC, 2006, pp:363-374 [Conf]
  19. Timothy F. Oliver, Bertil Schmidt, Yanto Jakop, Douglas L. Maskell
    Accelerating the Viterbi Algorithm for Profile Hidden Markov Models Using Reconfigurable Hardware. [Citation Graph (0, 0)][DBLP]
    International Conference on Computational Science (1), 2006, pp:522-529 [Conf]
  20. Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Darran Nathan, Ralf Clemens
    Multiple Sequence Alignment on an FPGA. [Citation Graph (0, 0)][DBLP]
    ICPADS (2), 2005, pp:326-330 [Conf]
  21. Menaka Rajapakse, Lonce L. Wyse, Bertil Schmidt, Vladimir Brusic
    Deriving Matrix of Peptide-MHC Interactions in Diabetic Mouse by Genetic Algorithm. [Citation Graph (0, 0)][DBLP]
    IDEAL, 2005, pp:440-447 [Conf]
  22. Tong Liu, Bertil Schmidt
    Parallel RNA Sequence-Structure Alignment. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2004, pp:- [Conf]
  23. Weiguo Liu, Bertil Schmidt
    A Case Study on Pattern-Based Systems for High Performance Computational Biology. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2005, pp:- [Conf]
  24. Timothy F. Oliver, Bertil Schmidt
    High Performance Biosequence Database Scanning on Reconfigurable Platforms. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2004, pp:- [Conf]
  25. Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Santoso
    Parallel Detection of Regulatory Elements with gMP. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2003, pp:156- [Conf]
  26. Bertil Schmidt, Heiko Schröder, Manfred Schimmler
    Massively Parallel Solutions for Molecular Sequence Analysis. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2002, pp:- [Conf]
  27. Weiguo Liu, Bertil Schmidt, Gerrit Voss, A. Schroder, Wolfgang Müller-Wittig
    Bio-sequence database scanning on a GPU. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2006, pp:- [Conf]
  28. Timothy F. Oliver, Bertil Schmidt, Douglas L. Maskell, Achutavarrier Prasad Vinod
    A reconfigurable architecture for scanning biosequence databases. [Citation Graph (0, 0)][DBLP]
    ISCAS (5), 2005, pp:4799-4802 [Conf]
  29. Bertil Schmidt, Heiko Schröder, Manfred Schimmler
    Protein Sequence Comparison on the Instruction Systolic Array. [Citation Graph (0, 0)][DBLP]
    PaCT, 2001, pp:498-509 [Conf]
  30. Manfred Schimmler, Bertil Schmidt, Hans-Werner Lang
    Design of a Bit-Serial Floating Point Unit for a Fine Grained Parallel Processor Array. [Citation Graph (0, 0)][DBLP]
    PDPTA, 2003, pp:255-261 [Conf]
  31. Manfred Schimmler, Bertil Schmidt, Hans-Werner Lang, Sven Heithecker
    An Area-Efficient Bit-Serial Integer Multiplier. [Citation Graph (0, 0)][DBLP]
    VLSI, 2003, pp:131-137 [Conf]
  32. Timothy F. Oliver, Bertil Schmidt, Darran Nathan, Ralf Clemens, Douglas L. Maskell
    Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW. [Citation Graph (0, 0)][DBLP]
    Bioinformatics, 2005, v:21, n:16, pp:3431-3432 [Journal]
  33. Bertil Schmidt, Manfred Schimmler, Heiko Schröder
    A Morphological Approach to Hough Transform on an Instruction Systolic Array. [Citation Graph (0, 0)][DBLP]
    Computers and Artificial Intelligence, 1999, v:18, n:6, pp:- [Journal]
  34. Bertil Schmidt, Heiko Schröder
    A Hybrid Architecture for Multimedia Processors. [Citation Graph (0, 0)][DBLP]
    Computers and Artificial Intelligence, 2001, v:20, n:3, pp:- [Journal]
  35. Bertil Schmidt, Heiko Schröder, Manfred Schimmler
    Tomographic Image Reconstruction on the Instruction Systolic Array. [Citation Graph (0, 0)][DBLP]
    Computers and Artificial Intelligence, 2001, v:20, n:1, pp:- [Journal]
  36. Tong Liu, Bertil Schmidt
    Parallel RNA secondary structure prediction using stochastic context-free grammars. [Citation Graph (0, 0)][DBLP]
    Concurrency and Computation: Practice and Experience, 2005, v:17, n:14, pp:1669-1685 [Journal]
  37. Bertil Schmidt, Lin Feng, Amey V. Laud, Yusdi Santoso
    Development of distributed bioinformatics applications with GMP. [Citation Graph (0, 0)][DBLP]
    Concurrency - Practice and Experience, 2004, v:16, n:9, pp:945-959 [Journal]
  38. Chunxi Chen, Bertil Schmidt
    An adaptive grid implementation of DNA sequence alignment. [Citation Graph (0, 0)][DBLP]
    Future Generation Comp. Syst., 2005, v:21, n:7, pp:988-1003 [Journal]
  39. Bertil Schmidt, Heiko Schröder, Manfred Schimmler
    A hybrid architecture for bioinformatics. [Citation Graph (0, 0)][DBLP]
    Future Generation Comp. Syst., 2002, v:18, n:6, pp:855-862 [Journal]
  40. Chunxi Chen, Bertil Schmidt
    Constructing large suffix trees on a computational grid. [Citation Graph (0, 0)][DBLP]
    J. Parallel Distrib. Comput., 2006, v:66, n:12, pp:1512-1523 [Journal]
  41. Manfred Schimmler, Bertil Schmidt, Hans-Werner Lang
    A bit-serial floating-point unit for a massively parallel system on a chip. [Citation Graph (0, 0)][DBLP]
    Parallel Algorithms Appl., 2004, v:19, n:2-3, pp:79-95 [Journal]
  42. Weiguo Liu, Bertil Schmidt
    Parallel Pattern-Based Systems for Computational Biology: A Case Study. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 2006, v:17, n:8, pp:750-763 [Journal]
  43. Malcolm Yoke-Hean Low, Weiguo Liu, Bertil Schmidt
    A Parallel BSP Algorithm for Irregular Dynamic Programming. [Citation Graph (0, 0)][DBLP]
    APPT, 2007, pp:151-160 [Conf]
  44. Weiguo Liu, Wolfgang Müller-Wittig, Bertil Schmidt
    Performance Predictions for General-Purpose Computation on GPUs. [Citation Graph (0, 0)][DBLP]
    ICPP, 2007, pp:50- [Conf]
  45. Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
    High Performance Database Searching with HMMer on FPGAs. [Citation Graph (0, 0)][DBLP]
    IPDPS, 2007, pp:1-7 [Conf]
  46. Jimin Feng, Samarjit Chakraborty, Bertil Schmidt, Weiguo Liu, Unmesh D. Bordoloi
    Fast Schedulability Analysis Using Commodity Graphics Hardware. [Citation Graph (0, 0)][DBLP]
    RTCSA, 2007, pp:400-408 [Conf]
  47. Yan Lin Aung, Douglas L. Maskell, Timothy F. Oliver, Bertil Schmidt, William Bong
    C-Based Design Methodology for FPGA Implementation of ClustalW MSA. [Citation Graph (0, 0)][DBLP]
    PRIB, 2007, pp:11-18 [Conf]
  48. Weiguo Liu, Bertil Schmidt, Gerrit Voss, Wolfgang Müller-Wittig
    Streaming Algorithms for Biological Sequence Alignment on GPUs. [Citation Graph (0, 0)][DBLP]
    IEEE Trans. Parallel Distrib. Syst., 2007, v:18, n:9, pp:1270-1281 [Journal]
  49. John Paul Walters, Xiandong Meng, Vipin Chaudhary, Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt, Darran Nathan, Joseph I. Landman
    MPI-HMMER-Boost: Distributed FPGA Acceleration. [Citation Graph (0, 0)][DBLP]
    VLSI Signal Processing, 2007, v:48, n:3, pp:223-238 [Journal]
  50. Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig
    Performance Analysis of General-Purpose Computation on Commodity Graphics Hardware: A Case Study Using Bioinformatics. [Citation Graph (0, 0)][DBLP]
    VLSI Signal Processing, 2007, v:48, n:3, pp:209-221 [Journal]
  51. Feng Lin, Heiko Schröder, Bertil Schmidt
    Solving the Bottleneck Problem in Bioinformatics Computing: An Architectural Perspective. [Citation Graph (0, 0)][DBLP]
    VLSI Signal Processing, 2007, v:48, n:3, pp:185-188 [Journal]

  52. A Reconfigurable Bloom Filter Architecture for BLASTN. [Citation Graph (, )][DBLP]


  53. MSA-CUDA: Multiple Sequence Alignment on Graphics Processing Units with CUDA. [Citation Graph (, )][DBLP]


  54. Molecular Dynamics Simulations on Commodity GPUs with CUDA. [Citation Graph (, )][DBLP]


  55. Workshop on Using Emerging Parallel Architectures for Computational Science. [Citation Graph (, )][DBLP]


  56. Pairwise Distance Matrix Computation for Multiple Sequence Alignment on the Cell Broadband Engine. [Citation Graph (, )][DBLP]


  57. Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA. [Citation Graph (, )][DBLP]


  58. Accelerating error correction in high-throughput short-read DNA sequencing data with CUDA. [Citation Graph (, )][DBLP]


  59. Parallel DNA Sequence Alignment on the Cell Broadband Engine. [Citation Graph (, )][DBLP]


  60. Accelerating BLASTP on the Cell Broadband Engine. [Citation Graph (, )][DBLP]


  61. GPU-MEME: Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences. [Citation Graph (, )][DBLP]


  62. SHREC: a short-read error correction method. [Citation Graph (, )][DBLP]


  63. A fast hybrid short read fragment assembly algorithm. [Citation Graph (, )][DBLP]


  64. Multi-threaded vectorized distance matrix computation on the CELL/BE and x86/SSE2 architectures. [Citation Graph (, )][DBLP]


  65. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities. [Citation Graph (, )][DBLP]


  66. Predicting peptides binding to MHC class II molecules using multi-objective evolutionary algorithms. [Citation Graph (, )][DBLP]


  67. CBESW: Sequence Alignment on the Playstation 3. [Citation Graph (, )][DBLP]


  68. Comparative phyloinformatics of virus genes at micro and macro levels in a distributed computing environment. [Citation Graph (, )][DBLP]


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