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Tatsuya Akutsu:
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## Publications of Author- Tatsuya Akutsu, Atsuhiro Takasu
**On PAC Learnability of Functional Dependencies.**[Citation Graph (0, 0)][DBLP] ALT, 1992, pp:229-239 [Conf] - Tatsuya Akutsu
**Computational and Statistical Methods in Bioinformatics.**[Citation Graph (0, 0)][DBLP] Active Mining, 2003, pp:11-33 [Conf] - Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng
**On the Complexity of Finding Control Strategies for Boolean Networks.**[Citation Graph (0, 0)][DBLP] APBC, 2006, pp:99-108 [Conf] - Dukka Bahadur, Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki
**Protein Side-chain Packing Problem: A Maximum Edge-weight Clique Algorithmic Approach.**[Citation Graph (0, 0)][DBLP] APBC, 2004, pp:191-200 [Conf] - Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu
**Clique-based algorithms for protein threading with profiles and constraints.**[Citation Graph (0, 0)][DBLP] APBC, 2005, pp:51-64 [Conf] - Tatsuya Akutsu, Daiji Fukagawa
**Inferring a Chemical Structure from a Feature Vector Based on Frequency of Labeled Paths and Small Fragments.**[Citation Graph (0, 0)][DBLP] APBC, 2007, pp:165-174 [Conf] - Morihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi
**A Novel Clustering Method for Analysis of Biological Networks using Maximal Components of Graphs.**[Citation Graph (0, 0)][DBLP] APBC, 2007, pp:257-266 [Conf] - Tatsuya Akutsu, Morihiro Hayashida, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto
**Protein Threading with Profiles and Constraints.**[Citation Graph (0, 0)][DBLP] BIBE, 2004, pp:537-544 [Conf] - Tatsuya Akutsu
**Algorithms for Point Set Matching with k-Differences.**[Citation Graph (0, 0)][DBLP] COCOON, 2004, pp:249-258 [Conf] - Tatsuya Akutsu, Feng Bao
**Approximating Minimum Keys and Optimal Substructure Screens.**[Citation Graph (0, 0)][DBLP] COCOON, 1996, pp:290-299 [Conf] - Tatsuya Akutsu, Sascha Ott
**Inferring a Union of Halfspaces from Examples.**[Citation Graph (0, 0)][DBLP] COCOON, 2002, pp:117-126 [Conf] - Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama
**Distribution of Distances and Triangles in a Point Set and Algorithms for Computing the Largest Common Point Sets.**[Citation Graph (0, 0)][DBLP] Symposium on Computational Geometry, 1997, pp:314-323 [Conf] - Tatsuya Akutsu
**A Linear Time Pattern Matching Algorithm Between a String and a Tree.**[Citation Graph (0, 0)][DBLP] CPM, 1993, pp:1-10 [Conf] - Tatsuya Akutsu
**Approximate String Matching with Don't Care Characters.**[Citation Graph (0, 0)][DBLP] CPM, 1994, pp:240-249 [Conf] - Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott
**On the Complexity of Deriving Position Specific Score Matrices from Examples.**[Citation Graph (0, 0)][DBLP] CPM, 2002, pp:168-177 [Conf] - Tatsuya Akutsu, Daiji Fukagawa
**Inferring a Graph from Path Frequency.**[Citation Graph (0, 0)][DBLP] CPM, 2005, pp:371-382 [Conf] - Tatsuya Akutsu, Kyotetsu Kanaya, Akira Ohyama, Asao Fujiyama
**Matching of Spots in 2D Electrophoresis Images. Point Matching Under Non-uniform Distortions.**[Citation Graph (0, 0)][DBLP] CPM, 1999, pp:212-222 [Conf] - Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
**A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis.**[Citation Graph (0, 0)][DBLP] Discovery Science, 2000, pp:86-98 [Conf] - Daiji Fukagawa, Tatsuya Akutsu
**Performance Analysis of a Greedy Algorithm for Inferring Boolean Functions.**[Citation Graph (0, 0)][DBLP] Discovery Science, 2003, pp:114-127 [Conf] - Daisuke Shinozaki, Tatsuya Akutsu, Osamu Maruyama
**Finding optimal degenerate patterns in DNA sequences.**[Citation Graph (0, 0)][DBLP] ECCB, 2003, pp:206-214 [Conf] - Morihiro Hayashida, Nobuhisa Ueda, Tatsuya Akutsu
**Inferring strengths of protein-protein interactions from experimental data using linear programming.**[Citation Graph (0, 0)][DBLP] ECCB, 2003, pp:58-65 [Conf] - Tatsuya Akutsu, Setsuo Ohsuga
**CHEMILOG - A Logic Programming Language/System for Chemical Information Processing.**[Citation Graph (0, 0)][DBLP] FGCS, 1988, pp:1176-1183 [Conf] - Tatsuya Akutsu
**Efficient and Robust Three-Dimensional Pattern Matching Algorithms Using Hashing and Dynamic Programming Techniques.**[Citation Graph (0, 0)][DBLP] HICSS (5), 1994, pp:225-234 [Conf] - Tatsuya Akutsu, Kentaro Onizuka, Masato Ishikawa
**New hashing techniques and their application to a protein structure database system.**[Citation Graph (0, 0)][DBLP] HICSS (5), 1995, pp:197-206 [Conf] - Tatsuya Akutsu, Mutsunori Yagiura
**On the Complexity of Deriving Score Functions from Examples for Problems in Molecular Biology.**[Citation Graph (0, 0)][DBLP] ICALP, 1998, pp:832-843 [Conf] - Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert
**Extensions of marginalized graph kernels.**[Citation Graph (0, 0)][DBLP] ICML, 2004, pp:- [Conf] - Tatsuya Akutsu
**Algorithms for Determining the Geometrical Congruity in Two and Three Dimensions.**[Citation Graph (0, 0)][DBLP] ISAAC, 1992, pp:279-288 [Conf] - Tatsuya Akutsu
**On Determining the Congruity of Point Sets in Higher Dimensions.**[Citation Graph (0, 0)][DBLP] ISAAC, 1994, pp:38-46 [Conf] - Tatsuya Akutsu
**Approximation and Exact Algorithms for RNA Secondary Structure Prediction and Recognition of Stochastic Context-Free Languages.**[Citation Graph (0, 0)][DBLP] ISAAC, 1998, pp:337-346 [Conf] - Tatsuya Akutsu, Daiji Fukagawa, Atsuhiro Takasu
**Approximating Tree Edit Distance Through String Edit Distance.**[Citation Graph (0, 0)][DBLP] ISAAC, 2006, pp:90-99 [Conf] - Tatsuya Akutsu, Magnús M. Halldórsson
**On the Approximation of Largest Common Subtrees and Largest Common Point Sets.**[Citation Graph (0, 0)][DBLP] ISAAC, 1994, pp:405-413 [Conf] - Daiji Fukagawa, Tatsuya Akutsu
**Fast Algorithms for Comparison of Similar Unordered Trees.**[Citation Graph (0, 0)][DBLP] ISAAC, 2004, pp:452-463 [Conf] - Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Minoru Kanehisa, Tatsuya Akutsu, Hiroshi Mamitsuka
**Application of a new probabilistic model for recognizing complex patterns in glycans.**[Citation Graph (0, 0)][DBLP] ISMB/ECCB (Supplement of Bioinformatics), 2004, pp:6-14 [Conf] - Jose C. Nacher, Jean-Marc Schwartz, Minoru Kanehisa, Tatsuya Akutsu
**Identification of metabolic units induced by environmental signals.**[Citation Graph (0, 0)][DBLP] ISMB (Supplement of Bioinformatics), 2006, pp:375-383 [Conf] - Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
**Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model.**[Citation Graph (0, 0)][DBLP] Pacific Symposium on Biocomputing, 1999, pp:17-28 [Conf] - Tatsuya Akutsu
**Efficient extraction of mapping rules of atoms from enzymatic reaction data.**[Citation Graph (0, 0)][DBLP] RECOMB, 2003, pp:1-8 [Conf] - Tatsuya Akutsu, Hiroki Arimura, Shinichi Shimozono
**On approximation algorithms for local multiple alignment.**[Citation Graph (0, 0)][DBLP] RECOMB, 2000, pp:1-7 [Conf] - Tatsuya Akutsu, Satoru Miyano
**On the approximation of protein threading.**[Citation Graph (0, 0)][DBLP] RECOMB, 1997, pp:3-8 [Conf] - Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
**Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function.**[Citation Graph (0, 0)][DBLP] RECOMB, 2000, pp:8-14 [Conf] - Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
**Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions.**[Citation Graph (0, 0)][DBLP] SODA, 1998, pp:695-702 [Conf] - Shu-Qin Zhang, Michael K. Ng, Wai-Ki Ching, Tatsuya Akutsu
**A linear control model for gene intervention in a genetic regulatory network.**[Citation Graph (0, 0)][DBLP] GrC, 2005, pp:354-358 [Conf] - Kiyoko F. Aoki, Hiroshi Mamitsuka, Tatsuya Akutsu, Minoru Kanehisa
**A score matrix to reveal the hidden links in glycans.**[Citation Graph (0, 0)][DBLP] Bioinformatics, 2005, v:21, n:8, pp:1457-1463 [Journal] - Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
**Inferring qualitative relations in genetic networks and metabolic pathways.**[Citation Graph (0, 0)][DBLP] Bioinformatics, 2000, v:16, n:8, pp:727-734 [Journal] - Tatsuya Akutsu, Kentaro Onizuka, Masato Ishikawa
**Rapid protein fragment search using hash functions based on the Fourier transform.**[Citation Graph (0, 0)][DBLP] Computer Applications in the Biosciences, 1997, v:13, n:4, pp:357-364 [Journal] - Yuichiro Hourai, Tatsuya Akutsu, Yutaka Akiyama
**Optimizing substitution matrices by separating score distributions.**[Citation Graph (0, 0)][DBLP] Bioinformatics, 2004, v:20, n:6, pp:863-873 [Journal] - Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa
**Fast and accurate database homology search using upper bounds of local alignment scores.**[Citation Graph (0, 0)][DBLP] Bioinformatics, 2005, v:21, n:7, pp:912-921 [Journal] - Hiroto Saigo, Jean-Philippe Vert, Nobuhisa Ueda, Tatsuya Akutsu
**Protein homology detection using string alignment kernels.**[Citation Graph (0, 0)][DBLP] Bioinformatics, 2004, v:20, n:11, pp:1682-1689 [Journal] - Jose C. Nacher, Nobuhisa Ueda, Takuji Yamada, Minoru Kanehisa, Tatsuya Akutsu
**Clustering under the line graph transformation: application to reaction network.**[Citation Graph (0, 0)][DBLP] BMC Bioinformatics, 2004, v:5, n:, pp:207- [Journal] - Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
**Optimizing amino acid substitution matrices with a local alignment kernel.**[Citation Graph (0, 0)][DBLP] BMC Bioinformatics, 2006, v:7, n:, pp:246- [Journal] - Tatsuya Akutsu
**On determining the congruence of point sets in d dimensions.**[Citation Graph (0, 0)][DBLP] Comput. Geom., 1998, v:9, n:4, pp:247-256 [Journal] - Tatsuya Akutsu
**Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots.**[Citation Graph (0, 0)][DBLP] Discrete Applied Mathematics, 2000, v:104, n:1-3, pp:45-62 [Journal] - Tatsuya Akutsu, Kyotetsu Kanaya, Akira Ohyama, Asao Fujiyama
**Point matching under non-uniform distortions.**[Citation Graph (0, 0)][DBLP] Discrete Applied Mathematics, 2003, v:127, n:1, pp:5-21 [Journal] - Tatsuya Akutsu, Hideo Bannai, Satoru Miyano, Sascha Ott
**On the complexity of deriving position specific score matrices from positive and negative sequences.**[Citation Graph (0, 0)][DBLP] Discrete Applied Mathematics, 2007, v:155, n:6-7, pp:676-685 [Journal] - Tatsuya Akutsu, Hisao Tamaki, Takeshi Tokuyama
**Distribution of Distances and Triangles in a Point Set and Algorithms for Computing the Largest Common Point Sets.**[Citation Graph (0, 0)][DBLP] Discrete & Computational Geometry, 1998, v:20, n:3, pp:307-331 [Journal] - Tatsuya Akutsu
**Algorithms for Point Set Matching with K-differences.**[Citation Graph (0, 0)][DBLP] Int. J. Found. Comput. Sci., 2006, v:17, n:4, pp:903-918 [Journal] - Daiji Fukagawa, Tatsuya Akutsu
**Fast Algorithms for Comparison of Similar Unordered Trees.**[Citation Graph (0, 0)][DBLP] Int. J. Found. Comput. Sci., 2006, v:17, n:3, pp:703-729 [Journal] - Wai-Ki Ching, Michael K. Ng, Eric S. Fung, Tatsuya Akutsu
**On construction of stochastic genetic networks based on gene expression sequences.**[Citation Graph (0, 0)][DBLP] Int. J. Neural Syst., 2005, v:15, n:4, pp:297-310 [Journal] - Tatsuya Akutsu
**Approximate String Matching with don't Care Characters.**[Citation Graph (0, 0)][DBLP] Inf. Process. Lett., 1995, v:55, n:5, pp:235-239 [Journal] - Daiji Fukagawa, Tatsuya Akutsu
**Performance analysis of a greedy algorithm for inferring Boolean functions.**[Citation Graph (0, 0)][DBLP] Inf. Process. Lett., 2005, v:93, n:1, pp:7-12 [Journal] - Tatsuya Akutsu
**A relation between edit distance for ordered trees and edit distance for Euler strings.**[Citation Graph (0, 0)][DBLP] Inf. Process. Lett., 2006, v:100, n:3, pp:105-109 [Journal] - K. C. Dukka Bahadur, Etsuji Tomita, Jun'ichi Suzuki, Tatsuya Akutsu
**Protein Side-chain Packing Problem: a Maximum Edge-weight Clique Algorithmic Approach.**[Citation Graph (0, 0)][DBLP] J. Bioinformatics and Computational Biology, 2005, v:3, n:1, pp:103-126 [Journal] - Bahadur K. C. Dukka, Etsuji Tomita, Jun'ichi Suzuki, Katsuhisa Horimoto, Tatsuya Akutsu
**Protein Threading with Profiles and Distance Constraints Using Clique Based Algorithms.**[Citation Graph (0, 0)][DBLP] J. Bioinformatics and Computational Biology, 2006, v:4, n:1, pp:19-42 [Journal] - Tatsuya Akutsu
**Efficient Extraction of Mapping Rules of Atoms from Enzymatic Reaction Data.**[Citation Graph (0, 0)][DBLP] Journal of Computational Biology, 2004, v:11, n:2/3, pp:449-462 [Journal] - Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
**Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function.**[Citation Graph (0, 0)][DBLP] Journal of Computational Biology, 2000, v:7, n:3-4, pp:331-343 [Journal] - Tatsuya Akutsu
**A new method of computer representation of stereochemistry. Transforming a stereochemical structure into a graph.**[Citation Graph (0, 0)][DBLP] Journal of Chemical Information and Computer Sciences, 1991, v:31, n:3, pp:414-417 [Journal] - Pierre Mahé, Nobuhisa Ueda, Tatsuya Akutsu, Jean-Luc Perret, Jean-Philippe Vert
**Graph Kernels for Molecular Structure-Activity Relationship Analysis with Support Vector Machines.**[Citation Graph (0, 0)][DBLP] Journal of Chemical Information and Modeling, 2005, v:45, n:4, pp:939-951 [Journal] - Tatsuya Akutsu
**Approximation and Exact Algorithms for RNA Secondary Structure Prediction and Recognition of Stochastic Context-free Languages.**[Citation Graph (0, 0)][DBLP] J. Comb. Optim., 1999, v:3, n:2-3, pp:321-336 [Journal] - Tatsuya Akutsu, Einoshin Suzuki, Setsuo Ohsuga
**Logic-based approach to expert systems in chemistry.**[Citation Graph (0, 0)][DBLP] Knowl.-Based Syst., 1991, v:4, n:2, pp:103-116 [Journal] - Einoshin Suzuki, Tatsuya Akutsu, Setsuo Ohsuga
**Knowledge-based system for computer-aided drug design.**[Citation Graph (0, 0)][DBLP] Knowl.-Based Syst., 1993, v:6, n:2, pp:114-126 [Journal] - Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa
**KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains.**[Citation Graph (0, 0)][DBLP] Nucleic Acids Research, 2004, v:32, n:Web-Server-Issue, pp:267-272 [Journal] - Tatsuya Akutsu, Atsuhiro Takasu
**On PAC Learnability of Functional Depencies.**[Citation Graph (0, 0)][DBLP] New Generation Comput., 1994, v:12, n:4, pp:359-374 [Journal] - Kiyoko F. Aoki, Nobuhisa Ueda, Atsuko Yamaguchi, Tatsuya Akutsu, Minoru Kanehisa, Hiroshi Mamitsuka
**Managing and Analyzing Carbohydrate Data.**[Citation Graph (0, 0)][DBLP] SIGMOD Record, 2004, v:33, n:2, pp:33-38 [Journal] - Tatsuya Akutsu, Magnús M. Halldórsson
**On the approximation of largest common subtrees and largest common point sets.**[Citation Graph (0, 0)][DBLP] Theor. Comput. Sci., 2000, v:233, n:1-2, pp:33-50 [Journal] - Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano
**Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model.**[Citation Graph (0, 0)][DBLP] Theor. Comput. Sci., 2003, v:1, n:298, pp:235-251 [Journal] - Tatsuya Akutsu, Satoru Miyano
**On the Approximation of Protein Threading.**[Citation Graph (0, 0)][DBLP] Theor. Comput. Sci., 1999, v:210, n:2, pp:261-275 [Journal] - Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara
**A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis.**[Citation Graph (0, 0)][DBLP] Theor. Comput. Sci., 2003, v:292, n:2, pp:481-495 [Journal] - Michael K. Ng, Shu-Qin Zhang, Wai-Ki Ching, Tatsuya Akutsu
**A Control Model for Markovian Genetic Regulatory Networks.**[Citation Graph (0, 0)][DBLP] , 2006, v:, n:, pp:36-48 [Journal] - Nobuhisa Ueda, Kiyoko F. Aoki-Kinoshita, Atsuko Yamaguchi, Tatsuya Akutsu, Hiroshi Mamitsuka
**A Probabilistic Model for Mining Labeled Ordered Trees: Capturing Patterns in Carbohydrate Sugar Chains.**[Citation Graph (0, 0)][DBLP] IEEE Trans. Knowl. Data Eng., 2005, v:17, n:8, pp:1051-1064 [Journal] - Takeyuki Tamura, Tatsuya Akutsu
**An O(1.787**[Citation Graph (0, 0)][DBLP]^{n})-Time Algorithm for Detecting a Singleton Attractor in a Boolean Network Consisting of AND/OR Nodes. FCT, 2007, pp:494-505 [Conf] - Jiexun Wang, Liang Zhao, Hiroshi Nagamochi, Tatsuya Akutsu
**An Efficient Algorithm for Generating Colored Outerplanar Graphs.**[Citation Graph (0, 0)][DBLP] TAMC, 2007, pp:573-583 [Conf] - Wai-Ki Ching, Shuqin Zhang, Michael K. Ng, Tatsuya Akutsu
**An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks.**[Citation Graph (0, 0)][DBLP] Bioinformatics, 2007, v:23, n:12, pp:1511-1518 [Journal] **Completing Networks Using Observed Data.**[Citation Graph (, )][DBLP]**Preface.**[Citation Graph (, )][DBLP]**Image Compression-based Approach to Measuring the Similarity of Protein Structures.**[Citation Graph (, )][DBLP]**Efficient computation of impact degrees for multiple reactions in metabolic networks with cycles.**[Citation Graph (, )][DBLP]**Latent Topic Extraction from Relational Table for Record Matching.**[Citation Graph (, )][DBLP]**Statistical Learning Algorithm for Tree Similarity.**[Citation Graph (, )][DBLP]**Sampling Effectiveness in Discovering Functional Relationships in Databases.**[Citation Graph (, )][DBLP]**Enumerating Stereoisomers of Tree Structured Molecules Using Dynamic Programming.**[Citation Graph (, )][DBLP]**Constant Factor Approximation of Edit Distance of Bounded Height Unordered Trees.**[Citation Graph (, )][DBLP]**Prediction of Protein Beta-Sheets: Dynamic Programming versus Grammatical Approach.**[Citation Graph (, )][DBLP]**Algorithms for Inference, Analysis and Control of Boolean Networks.**[Citation Graph (, )][DBLP]**An Improved Algorithm for Detecting a Singleton Attractor in a Boolean Network Consisting of AND/OR Nodes.**[Citation Graph (, )][DBLP]**Measuring Structural Robustness of Metabolic Networks under a Boolean Model Using Integer Programming and Feedback Vertex Sets.**[Citation Graph (, )][DBLP]**A Bipartite Graph Based Model of Protein Domain Networks.**[Citation Graph (, )][DBLP]**Integer programming-based methods for attractor detection and control of boolean networks.**[Citation Graph (, )][DBLP]**Approximating Tree Edit Distance through String Edit Distance.**[Citation Graph (, )][DBLP]**HSEpred: predict half-sphere exposure from protein sequences.**[Citation Graph (, )][DBLP]**Cascleave: towards more accurate prediction of caspase substrate cleavage sites.**[Citation Graph (, )][DBLP]**Subcellular location prediction of proteins using support vector machines with alignment of block sequences utilizing amino acid composition.**[Citation Graph (, )][DBLP]**Correlation between structure and temperature in prokaryotic metabolic networks.**[Citation Graph (, )][DBLP]**Identification of novel DNA repair proteins via primary sequence, secondary structure, and homology.**[Citation Graph (, )][DBLP]**Prediction of RNA secondary structure with pseudoknots using integer programming.**[Citation Graph (, )][DBLP]
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